Sequence
atgc intronic sequence ATGC exonic sequence...taaacaattttcctgctttgcttttcctttatatatatatatatatatatatatatatatatatagtagttgaagaagttgattttgtttgttgaatcagTATGCGTGTAGGAAGACATTGGCAGACAGTCGGCCGCGCATCAGAGGGCGGTTTGCGAGGAACGAGGAAATTGAGAAGGGTTCGCAGAGTCAGTGGAGTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g03870.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA15G32330.1 (Glycine max), 3'ss of exon 2
taaacaattttcctgctttgcttttcctttatatatatatatatatatatatatatatatatatagtagttgaagaagttgattttgttt----gttgaatcagTATGCGTGTAGGAAGACATTGGCAGACAGTCGGCCGCGCATCAGAGGGCGGTTTGCGAGGAACGAGGAAATTGAGAAGGGTTCGCAGAGTCAGTGGAGTA
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-gtgcaatgtttattgtct-ttaatggtccacccctatactaattaat-tatgaaaaaat-tacagtgaaaatattaacttattttgttctggcatggaatcagTATGCTTGCAGGAAGACATTGGCAGACAGCAGGCCACGCATCAGAGGACGGTTTGCGAGGAACGACGAAATTGACAAGAATACTACACTTCAGTGGAGCC
upper sequence: Vv06s0004g03870.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA13G40610.1 (Glycine max), 3'ss of exon 2
taaacaattt-tcctgctttgcttttcctttatatatatatatatatatatatatatatatatatagtagttgaagaagttgattttgttt----gttgaatcagTATGCGTGTAGGAAGACATTGGCAGACAGTCGGCCGCGCATCAGAGGGCGGTTTGCGAGGAACGAGGAAATTGAGAAGGGTTCGCAGAGTCAGTGGAGTA
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---ccaattcatagtgcaatgtttattgtctcta-atggtca-acccttatatactaattaaaacagtgaaaatattaacttattttgttctggcacgaaatcagTATGCTTGCAGGAAGACATTGGCAGACAGCAGGCCACGCATTAGAGGACGGTTTGCGAGGAATGACGAAATTGACAAGAACACTACAATTCAATGGAGCC
upper sequence: Vv06s0004g03870.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA12G07920.1 (Glycine max), 3'ss of exon 1
taaacaattttcctgctttgcttttcctttatatatatatatatatatatatat-atatatatatagtagttgaagaagttgattttgtttgttgaatcagTATGCGTGTAGGAAGACATTGGCAGACAGTCGGCCGCGCATCAGAGGGCGGTTTGCGAGGAACGAGGAAATTGAGAAGGGTTCGCAGAGTCAGTGGAGTA
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-atatagctctattggtccatcacagcactgtttaccgtttagtttttagtcatgatgcaatcacaacacaaatattaacttgttttcttctgggaatcagTATGCTTGCAGAAAGACATTGGCAGATAGCAGGCCACGTATCAGAGGGCGATTTGCAAGGAATGGCGAAATTGCAATTAACCCTCCAGCTCAGTGGAGTC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatatatatatatatatatagtagttgaagaagttgattttgtttgttgaatcagTATGCGTGTAGGAAGACATTGGCAGACAGTCGGCCGCGCATCAGAGGGCGGTTTGCGAGGAACGAGGAAATTGAGAAGGGTTCGCAGAGTCAGTGGAGTA
agttgat putative branch site (score: 5)
atatatatatatatag TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
taaacaattttcctgctttgcttttcctttatatatatatatatatatatatatatatatatatagtagttgaagaagttgattttgtttgttgaatcagTATGCGTGTAGGAAGACATTGGCAGACAGTCGGCCGCGCATCAGAGGGCGGTTTGCGAGGAACGAGGAAATTGAGAAGGGTTCGCAGAGTCAGTGGAGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
-aaacaat
- - - - - -cctgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaagaag