Sequence
atgc intronic sequence ATGC exonic sequence...gcaaacacctaatgtcattagctacttctctttccctatgtaatggttggtgtgttagctatcgatctattactaacagaaacctaactttctgttgcagTCACCAAGGAGGGATTGTTGTAGAGTTTTGCCATCAAGGAGGAGCTCATCTATGTACCTATGGGTGGGCAACTGCCGAGAAAGTGAAATTAGTATAGAGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g03680.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT1G07850.1 (Arabidopsis thaliana), 3'ss of exon 3
------------------------------------gcaaacacctaatgtcat--tagctacttctctttccctatgtaat--------------ggttgg---tgtgttagctatcgatctattactaacagaaacctaactttctgt------tgcagTCACCAAGGAGGGATTGTTGTAGAGTTTTGCCATCAAGGAGGAGCTCATCTATGTACCTATGGGTGGGCAACTGCCGAGAAAGTGAAATTAGTATAGAGC---
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gttggtccacatcttctctttgcttcattattaacaacttgcatcaaatatagtcataccggtttggttttggctagtgaattgacagagataaccggctgagatcatataataaaccggtgttgaaataacatgatgttaaaattgtgtgtttggtgcagTCACCGAGGAGGGATTGTTGCAGAGTATTGCCGAGTAGGAGAAACCAAACGATGTATATTTGGGTCGGAAATTGCGCAGATGGAGAGATCAGT---GAGCTTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttggtgtgttagctatcgatctattactaacagaaacctaactttctgttgcagTCACCAAGGAGGGATTGTTGTAGAGTTTTGCCATCAAGGAGGAGCTCATCTATGTACCTATGGGTGGGCAACTGCCGAGAAAGTGAAATTAGTATAGAGC
ctttctgtt CT-rich tract
tattactaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gcaaacacctaatgtcattagctacttctctttccctatgtaatggttggtgtgttagctatcgatctattactaacagaaacctaactttctgttgcagTCACCAAGGAGGGATTGTTGTAGAGTTTTGCCATCAAGGAGGAGCTCATCTATGTACCTATGGGTGGGCAACTGCCGAGAAAGTGAAATTAGTATAGAGC
- aaacacc
- - - - - - - - - - -ctacttc
- - - - - - - - - - - - - - -ctttccc
- - - - - - - - - - - - - - - - - - - - - -tggttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaccta