Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34548451|gb|CF516683.1|CF516683EST: CTGGCAGAACAACGACCACGTATTCGAGGACAATTTGTCCGGCAAAATGT GTCTGACAACAAAGCAGGGAAAGATGGGCAAAGCGACGACCCTTCGTCTGC
genomic: CTGGCAGAACAACGACCACGTATTCGAGGACAATTTGTCCGGCAAAATGTgtatgctaac ... tgttttccagGTCTGACAACAAAGCAGGGAAAGATGGGCAAAGCGACGACCCTTCGTCTGC
EST:
gi|110423622|gb|EC989969.1|EC989969EST: CTGGCAGAACAACGACCACGTATTCGAGGACAATTTGTCCGGCAAAATGT GTCTGACAACAAAGCAGGGAAAGATGGGCAAAGCGACGACCCTTCGTCTGC
genomic: CTGGCAGAACAACGACCACGTATTCGAGGACAATTTGTCCGGCAAAATGTgtatgctaac ... tgttttccagGTCTGACAACAAAGCAGGGAAAGATGGGCAAAGCGACGACCCTTCGTCTGC
EST:
gi|110373176|gb|EC937392.1|EC937392EST: CTGGCAGAACAACGACCACGTATTCGAGGACAATTTGTCCGGCAAAATGT GTCTGACAACAAAGCAGGGAAAGATGGGCAAAGCGACGACCCTTCGTCTGC
genomic: CTGGCAGAACAACGACCACGTATTCGAGGACAATTTGTCCGGCAAAATGTgtatgctaac ... tgttttccagGTCTGACAACAAAGCAGGGAAAGATGGGCAAAGCGACGACCCTTCGTCTGC
EST:
gi|34548536|gb|CF516768.1|CF516768EST: CTGGCAGAACAACGACCACGTATTCGAGGACAATTTGTCCGGCAAAATGT GTCTGACAACAAAGCAGGGAAAGATGGGCAAAGCGACGACCCTTCGTCTGC
genomic: CTGGCAGAACAACGACCACGTATTCGAGGACAATTTGTCCGGCAAAATGTgtatgctaac ... tgttttccagGTCTGACAACAAAGCAGGGAAAGATGGGCAAAGCGACGACCCTTCGTCTGC
EST:
gi|34549593|gb|CF517825.1|CF517825EST: CTGGCAGAACAACGACCACGTATTCGAGGACAATTTGTCCGGCAAAATGT GTCTGACAACAAAGCAGGGAAAGATGGGCAAAGCGACGACCCTTCGTCTGC
genomic: CTGGCAGAACAACGACCACGTATTCGAGGACAATTTGTCCGGCAAAATGTgtatgctaac ... tgttttccagGTCTGACAACAAAGCAGGGAAAGATGGGCAAAGCGACGACCCTTCGTCTGC
EST:
gi|161715974|gb|FC069102.1|FC069102EST: CTGGCAGAACAACGACCACGTATTCGAGGACAATTTGTCCGGCAAAATGT GTCTGACAACAAAGCAGGGAAAGATGGGCAAAGCGACGACCCTTCGTCTGC
genomic: CTGGCAGAACAACGACCACGTATTCGAGGACAATTTGTCCGGCAAAATGTgtatgctaac ... tgttttccagGTCTGACAACAAAGCAGGGAAAGATGGGCAAAGCGACGACCCTTCGTCTGC
EST:
gi|34549066|gb|CF517298.1|CF517298EST: CTGGCAGAACAACGACCACGTATTCGAGGACAATTTGTCCGGCAAAATGT GTCTGACAACAAAGCAGGGAAAGATGGGCAAAGCGACGACCCTTCGTCTGC
genomic: CTGGCAGAACAACGACCACGTATTCGAGGACAATTTGTCCGGCAAAATGTgtatgctaac ... tgttttccagGTCTGACAACAAAGCAGGGAAAGATGGGCAAAGCGACGACCCTTCGTCTGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctagttcatcatttcttttgctttctttaagtctcactcgtgctttgttttccagGTCTGACAACAAAGCAGGGAAAGATGGGCAAAGCGACGACCCTTCGTCTGCGAACAATTCTTGTGATGGTGGTATTCGATAACATAGGCTGGGATACAGT
gtctcac putative branch site (score: 3)
ctttgttttcc putative PPT
atttctttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgctaacacaattccataacgcagactaccacactagttcatcatttcttttgctttctttaagtctcactcgtgctttgttttccagGTCTGACAACAAAGCAGGGAAAGATGGGCAAAGCGACGACCCTTCGTCTGCGAACAATTCTTGTGATGGTGGTATTCGATAACATAGGCTGGGATACAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG