1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...caagttttgaaaaagggagtattgtagaggatatgcaaccccgttctttttcttgtaatgttgtgaactggagatgctgaagaacacttttattttgcagATTGTCAAAATTAAGGACATCATAAGGCCACCTGACAAGGAAAAGTTCAATGATGTGTATATTGTTTATGAATTAATGGATACTGATCTACATCAGATAA
species | Vitis vinifera |
transcript | Vv06s0004g03620.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAAGGACACTCCGGGAGATCAAACTCCTTTGCCATATGGATCATGAAAAT ATTGTCAAAATTAAGGACATCATAAGGCCACCTGACAAGGAAAAGTTCAATEST: gi|352768505|gb|FQ467461.1|FQ467461
genomic: AAAGGACACTCCGGGAGATCAAACTCCTTTGCCATATGGATCATGAAAATgtattcacat ... tattttgcagATTGTCAAAATTAAGGACATCATAAGGCCACCTGACAAGGAAAAGTTCAAT
EST: AAAGGACACTCCGGGAGATCAAACTCCTTTGCCATATGGATCATGAAAAT ATTGTCAAAATTAAGGACATCATAAGGCCACCTGACAAGGAAAAGTTCAATEST: gi|32268188|gb|CD717347.1|CD717347
genomic: AAAGGACACTCCGGGAGATCAAACTCCTTTGCCATATGGATCATGAAAATgtattcacat ... tattttgcagATTGTCAAAATTAAGGACATCATAAGGCCACCTGACAAGGAAAAGTTCAAT
EST: AAAGGACACTCCGGGAGATCAAACTCCTTTGCCATATGGATCATGAAAAT ATTGTCAAAATTAAGGACATCATAAGGCCACCTGACAAGGAAAAGTTCAAT
genomic: AAAGGACACTCCGGGAGATCAAACTCCTTTGCCATATGGATCATGAAAATgtattcacat ... tattttgcagATTGTCAAAATTAAGGACATCATAAGGCCACCTGACAAGGAAAAGTTCAAT
ctttttcttgtaatgttgtgaactggagatgctgaagaacacttttattttgcagATTGTCAAAATTAAGGACATCATAAGGCCACCTGACAAGGAAAAGTTCAATGATGTGTATATTGTTTATGAATTAATGGATACTGATCTACATCAGATAA
cttttatttt CT-rich tract
aacacttttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caagttttgaaaaagggagtattgtagaggatatgcaaccccgttctttttcttgtaatgttgtgaactggagatgctgaagaacacttttattttgcagATTGTCAAAATTAAGGACATCATAAGGCCACCTGACAAGGAAAAGTTCAATGATGTGTATATTGTTTATGAATTAATGGATACTGATCTACATCAGATAA
- - - -tgaaaaa
- - - - - - - - - - - - - - - - -tgcaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaagaac