Sequence
atgc intronic sequence ATGC exonic sequencegtagtgatgtttttgctcagggcatcatcttcttggtttcttcatacccttccacccatcattttggctcaaaaaattgtttgttgtgtggcagAGGATACACGGGGTCAAAGCTTTCAAACAATATCGAATGTGAAATATTTCAAGTATTGCTGGAGGAGGCGAAGGAGAGTTATCCAGAGGACGTCGTAGTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g03280.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA02G08350.1 (Glycine max), 3'ss of exon 3
gtagtgatgtttttgctcagggcatcatcttcttggtttcttcatacccttccacccatcattttggctcaaaaaattgtttgt-tgtgtggcagAGGATACACGGGGTCAAAGCTTTCAAACAATATCGAATGTGAAATATTTCAAGTATTGCTGGAGGAGGCGAAGGAGAGTTATCCAGAGGACGTCGTAGTG
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gtacagaagactc-gtttctgttattga-ttattgattttgctactctatt------attgatttcattataaactttccctgtatatgtgacagGGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCAAGTTCTGCTTGAGGAGGCTAAAGAAAGTTACTCAGAGGAGAAACTGATT
upper sequence: Vv06s0004g03280.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA10G33100.1 (Glycine max), 3'ss of exon 3
gtagtgatgtttttgctcagggcatcatct--tcttggtttcttcatacccttccacccatcattttggctcaaaaaattgtttgt---tgtgtggcagAGGATACACGGGGTCAAAGCTTTCAAACAATATCGAATGTGAAATATTTCAAGTATTGCTGGAGGAGGCGAAGGAGAGTTATCCAGAGGACGTCGTAGTG
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gtatggaagcacttg-taattctgttatttaacgttggttttgctatactctattagtggtttcattatcatagcttactttccccgtatatgtgacagAGGGTACAAAGATTCAAAGCTTTCAAACAATATTGAATGTGAAATCTTCCAAGTTCTGCTTAAAGAAAGTTACTCGGAGGAGAAAGTGATTGCAATGAAG
upper sequence: Vv06s0004g03280.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA16G27430.1 (Glycine max), 3'ss of exon 3
gtagtgatgtttttgctcagggcatcatcttcttggtttcttcatacccttccacccatcattttggctcaaaaaattgtttgt-tgtgtggcagAGGATACACGGGGTCAAAGCTTTCAAACAATATCGAATGTGAAATATTTCAAGTATTGCTGGAGGAGGCGAAGGAGAGTTATCCAGAGGACGTCGTAGTG
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gtacggaagactc-gttcctgttattgt-tcattagttt--tgatactctatta----ttggtttcattataaattttccccgtatatgtgacagGGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCAAGTTCTGCTTGAGGAGGCTAAAGAAAGTTACTCGGAGGAGAAAGTGATTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|77577867|gb|DV217683.1|DV217683EST: GTGGTGCTTCAAACCGACAACTCTGTGTTGTATGACCGCCTGAGTACAAG AGGATACACGGGGTCAAAGCTTTCAAACAATATCGAATGTGAAATATTTCA
genomic: GTGGTGCTTCAAACCGACAACTCTGTGTTGTATGACCGCCTGAGTACAAGgtagtgatgt ... tgtgtggcagAGGATACACGGGGTCAAAGCTTTCAAACAATATCGAATGTGAAATATTTCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttcatacccttccacccatcattttggctcaaaaaattgtttgttgtgtggcagAGGATACACGGGGTCAAAGCTTTCAAACAATATCGAATGTGAAATATTTCAAGTATTGCTGGAGGAGGCGAAGGAGAGTTATCCAGAGGACGTCGTAGTG
aaaaaattgtttgtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtagtgatgtttttgctcagggcatcatcttcttggtttcttcatacccttccacccatcattttggctcaaaaaattgtttgttgtgtggcagAGGATACACGGGGTCAAAGCTTTCAAACAATATCGAATGTGAAATATTTCAAGTATTGCTGGAGGAGGCGAAGGAGAGTTATCCAGAGGACGTCGTAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA