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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcacccatctcgcgatgatcatcgtcctcagtctactgtgttcatgtttgattggaactctactataatgaatctgacgaaaaactttctgggtttgtagAGCTAATGTTGCTAGGGTTCATATCCTTGCTCCTAACAGTAGGACAAGGTCTGATATCGACTATATGTATATCAAAGAGTGTTGCAGCAACTTGGCATCC

Basic information

species Vitis vinifera
transcript Vv06s0004g03100.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g03100.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA12G29330.1 (Glycine max), 3'ss of exon 2
--gtgcacccatctcgcgatgatcatcgtcctcagtctactgtgttcatgtttgattggaactctact-----ataatgaatctgacgaaaaact---ttctgggtttgtagAGCTAATGTTGCTAGGGTTCATATCCTTGCTCCTAACAGTAGGACAAGGTCTGATATCGACTATATGTATATCAAAGAGTGTTGCAGCAACTTGGCATCC
  |||   |     |    | || |      |  || || ||||  ||  ||  ||   | ||  | |     ||||| ||  | |   | |  |   ||    |  || |||||| ||| |  | ||||||||||| ||||||||||| |||||||||||||| |||||||  |||||||||||| | |  ||||| |  || |  || ||
gtgtgagtctgaaccatt-taattagtaaagtt-gttta-tgtga-caaattaaatcaaagcttcagtgaaaaataattaacttaattgatagttggattacatgcatgcagAGCTTATGCTATTGGGGTTCATATCGTTGCTCCTAACGGTAGGACAAGGTCTAATATCGAGGATATGTATATCAGAAAAGGTTGCGGGGACATTTCACCC

upper sequence: Vv06s0004g03100.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA12G29310.1 (Glycine max), 3'ss of exon 2
------------gtgcacccatctcgcgat-gatcatcgtcctcagtctactgtgttcatgtttgattggaactctactataatga-atctgacgaaaaactttctgggtttgtagAGCTAATGTTGCTAGGGTTCATATCCTTGCTCCTAACAGTAGGACAAGGTCTGATATCGACTATATGTATATCAAAGAGTGTTGCAGCAACTTGGCATCC
             |  |   ||    | ||  || | | |  | |    ||    || | | ||  |   || |  | ||   ||| || ||     |     |    |  || |||||| |||||| | ||||||||||| ||||||||||| |||||||||||||| |||||||  ||||| |||||| | |  ||||| | ||| |  || ||
gttagtttgagtatatatatatgaaacaattaattagcttgtttaagtgacaa-attaaagcttagtgaaaaata-attaacttgatatatggttggattacatgcatgcatgcagAGCTTATGTTGTTGGGGTTCATATCATTGCTCCTAACGGTAGGACAAGGTCTAATATCGAGGATATGCATATCAGAAAAGGTTGCCGGAACATTTCACCC

upper sequence: Vv06s0004g03100.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA13G40300.1 (Glycine max), 3'ss of exon 2
----gtgcacccatct---cgcgatgatcatcgtcctcagtctactgtgttcatgtttgattggaactctactataatga-atctgacgaaaaactttctgggtttgtagAGCTAATGTTGCTAGGGTTCATATCCTTGCTCCTAACAGTAGGACAAGGTCTGATATCGACTATATGTATATCAAAGAGTGTTGCAGCAACTTGGCATCC
    ||      || |    |   | || | | |  |      ||     | | | ||  |   || |  | ||   ||| |  ||    | |    |  | |  || |||||| |||||| | ||||||||||| ||||||||||| |||||| ||||| | |||||||  ||||| |||||| | |  ||||| | ||  |  || ||
gttagtttgagtatatgaatgaattaattaacttgtttgaataacaa-actaaagcttagtgaaaaata-attaagttgatagttggattacatgcatgcgtgaatgcagAGCTTATGTTGTTGGGGTTCATATCATTGCTCCTAACGGTAGGAGAAGGTGTAATATCGAGGATATGCATATCAGAAAAGGTTGCGGGAAAATTTCACCC

upper sequence: Vv06s0004g03100.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA12G07530.1 (Glycine max), 3'ss of exon 2
--gtgcacccatctcgcgatgatcatcgtcctcagtctactgtgttcatgtttgattggaactctactataatgaatctgacgaaaaactttctgggtttgtagAGCTAATGTTGCTAGGGTTCATATCCTTGCTCCTAACAGTAGGACAAGGTCTGATATCGACTATATGTATATCAAAGAGTGTTGCAGCAACTTGGCATCC
    |   ||||||  || | ||  |  |  ||||| || ||   | |   || ||| | | |  |   |||| |||  |  |   || | |       ||||||||| |||||  | ||||||||||| ||||| ||||| |||||||||||||  ||||| |  ||||| |||||| | |  |||||||  || ||||||||
gttcgagtccatctaccg-taatt-taatgatcagtgta-tgaaattaaacttaatttgtagttaa---taattaattggtgggttaattgt-------tgtagAGCTTATGTTATTGGGGTTCATATCGTTGCTTCTAACGGTAGGACAAGGTCCAATATCAAGAATATGCATATCAGAAAAAGTTGCAGGGACATGGCATCC

upper sequence: Vv06s0004g03100.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA11G15920.1 (Glycine max), 3'ss of exon 2
gtgcacccatctcgcgatgatc-atcgtcctcagtctactgtgttcatgtttgattggaactctactataatgaatctgacgaaaaactttctgggtttgtagAGCTAATGTTGCTAGGGTTCATATCCTTGCTCCTAACAGTAGGACAAGGTCTGATATCGACTATATGTATATCAAAGAGTGTTGCAGCAACTTGGCATCC
           ||| |   ||| | |||  | | |  |   |    ||     | |  |||| |    | |  |||     |      |   ||   |||||||||| |||||  | ||||||||||| ||||| ||||| |||||||||||||  ||||| |  ||||| || ||| | |  |||||||  || ||||| ||
---------gttcgtgtccatctaccgtaattaattaatgattagtataggaaaattaaactgtgtggttaataattaattggtgggttaattg---ttgtagAGCTTATGTTATTGGGGTTCATATCGTTGCTTCTAACGGTAGGACAAGGTCCAATATCAAGAATATGCATTTCAGAAAAAGTTGCAGGGACATGGCACCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttgattggaactctactataatgaatctgacgaaaaactttctgggtttgtagAGCTAATGTTGCTAGGGTTCATATCCTTGCTCCTAACAGTAGGACAAGGTCTGATATCGACTATATGTATATCAAAGAGTGTTGCAGCAACTTGGCATCC
                          atctgac  putative branch site (score: 3)
                                       ctttctg  putative PPT
                  tataatgaat  TA-rich tract