Sequence
atgc intronic sequence ATGC exonic sequence...cgttgttaaattgcattaaaggtatgagataaactgtgctataaacaagagatgagatgaaactcaactcatgaaaacaaattgcctcttgttgtcacagTTGGATGATTGGGTACTATGCCGGGTCCGCCATAAAGGCAACATGCCAAAGAACACATGTGAAGGTCAAGACAGTCCTAGCACAGAATTGATAAGCTACT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g03080.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA12G29360.1 (Glycine max), 3'ss of exon 3
cgttgttaaattgcattaaaggtatgagataaactgtgctataaacaagag-atgagatg-aaactcaactcatgaaaacaaattgcctcttgttgtcacagTTGGATGATTGGGTACTATGCCGGGTCCGCCATAAAGGCAACATGCCAAAGAACACATGTGAAGGTCAAGACAGTCCTAGC--ACAGAATTGATAAGCTACT
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tctattcacactattttcata-tgtgcttctgaatatgtgatcccctagttcataatacatgaactcgatgcaataataaggat-acctcttgctgtcacagTTGGATGACTGGGTACTATGCCGGGTTCGATATAAAGGCTACTCTCAGAAGAATTCATGTGAAAATCAAGAGAGTCCTAGTGAACTAAACTTGTCAGCAA-- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caagagatgagatgaaactcaactcatgaaaacaaattgcctcttgttgtcacagTTGGATGATTGGGTACTATGCCGGGTCCGCCATAAAGGCAACATGCCAAAGAACACATGTGAAGGTCAAGACAGTCCTAGCACAGAATTGATAAGCTACT
cctcttgtt CT-rich tract
aaaacaaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cgttgttaaattgcattaaaggtatgagataaactgtgctataaacaagagatgagatgaaactcaactcatgaaaacaaattgcctcttgttgtcacagTTGGATGATTGGGTACTATGCCGGGTCCGCCATAAAGGCAACATGCCAAAGAACACATGTGAAGGTCAAGACAGTCCTAGCACAGAATTGATAAGCTACT
- - - - - - - - -aaaggta
- - - - - - - - - - - - - -gataaac
- - - - - - - - - - - - - - - - - - - - -taaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - agatgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caactca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacaaa