1 5' 3' | 2 5' 3' | 3 5' 3' |
...cctatttagagcagctatttggagaacctggttggatcatgttacctattattgatagagttccatcttaaccctccttttccctctttcctgcatgcagCATCACAGTTGTATTTTTTGGCAAAGAAGGCATTAGCGGTGACCTGATTACAGTGAAGGAAGGCGTGATTGAACCTGTGACGGTGTCTTTCCAGCAAGGT
species | Vitis vinifera |
transcript | Vv06s0004g02970.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCGGGGAAGTTTCTGGTTGCTTTCACTTTTGATGCTACTGCAGCTGGAAG CATCACAGTTGTATTTTTTGGCAAAGAAGGCATTAGCGGTGACGTGATTGC
genomic: CCGGGGAAGTTTCTGGTTGCTTTCACTTTTGATGCTACTGCAGCTGGAAGgtacattttg ... ctgcatgcagCATCACAGTTGTATTTTTTGGCAAAGAAGGCATTAGCGGTGACCTGATTAC
ctattattgatagagttccatcttaaccctccttttccctctttcctgcatgcagCATCACAGTTGTATTTTTTGGCAAAGAAGGCATTAGCGGTGACCTGATTACAGTGAAGGAAGGCGTGATTGAACCTGTGACGGTGTCTTTCCAGCAAGGT
tcttaac putative branch site (score: 2)
ttccatcttaaccctc CT-rich tract
attgata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctatttagagcagctatttggagaacctggttggatcatgttacctattattgatagagttccatcttaaccctccttttccctctttcctgcatgcagCATCACAGTTGTATTTTTTGGCAAAGAAGGCATTAGCGGTGACCTGATTACAGTGAAGGAAGGCGTGATTGAACCTGTGACGGTGTCTTTCCAGCAAGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - -agcagct
- - - - - - - - - - ggagaac
- - - - - - - - - - - - - - tggttgg
- - - - - - - - - - - - - - - - - - tcatgtt