Sequence
atgc intronic sequence ATGC exonic sequence...ctatgtagattatgacttgtgggttttacttattcaaattcaaagggctatgtactcctattttacagcttaatctagatgtgtccctttttggctgcagATCACATCCACTCTTACATTTGCTGCAGCCTGTGCATCTGCAGGCATTACCGTCCTTATTGGTAATGATCTTAATAGCTGTGCCCACAACAACTGCTTAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g02790.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA11G20510.1 (Glycine max), 3'ss of exon 2
---------------ctatgtagattatgacttgtgggttttacttattcaaattcaaagggctatgtactcctattttacagcttaatctagatgtgtccctttttggctgcagATCACATCCACTCTTACATTTGCTGCAGCCTGTGCATCTGCAGGCATTACCGTCCTTATTGGTAATGATCTTAATAGCTGTGCCCACAACAACTGCTTAG
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gtttttaatgtagacatgtgtagctt-taacttgtg---tttactttttccccctcagaaaatgctgtagtcttaattt-caga-------agacccgtgtcttcca---tgcagGTCACTTCTACCCTTACATTTGCAGCAGCATGTGCATCAGCAGGCATCACAGTCCTCATTGATAATGATCTTGGAAGTTGTTCACAGAACCACTGTGTGC
upper sequence: Vv06s0004g02790.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA12G08090.1 (Glycine max), 3'ss of exon 2
-ctatgtagattatgacttgtgggttttacttattcaaattcaaagggctatgtactcctattttacagcttaatctagatgtgtccctttttggctgcagATCACATCCACTCTTACATTTGCTGCAGCCTGTGCATCTGCAGGCATTACCGTCCTTATTGGTAATGATCTTAATAGCTGTGCCCACAACAACTGCTTAG
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gtttttaatgtagacatgcatagctttaacttatgctactttttttccct-tctgaaaatgctgtagtgttaatttcagaagacttgtgtcttccatacagGTCACTTCTACCCTTACATTTGCAGCAGCCTGTGCATCAGCAGGCATCACAATCCTCATTGATAATGATCTTGGTAATTGTTCACAGAACCACTGTGTGCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|29782104|gb|CB347163.2|CB347163EST: GCTGCTTGCAGAATTATCAAGTTGTTGCTTTGTTTACTATTGGTGATGGG ATCACATCCACTCTTACATTTGCTGCAGCCTGTGCATCTGCAGGCATTACC
genomic: GCTGCTTGCAGAATTATCAAGTTGTTGCTTTGTTTACTATTGGTGATGGGgtaatataac ... ttggctgcagATCACATCCACTCTTACATTTGCTGCAGCCTGTGCATCTGCAGGCATTACC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggctatgtactcctattttacagcttaatctagatgtgtccctttttggctgcagATCACATCCACTCTTACATTTGCTGCAGCCTGTGCATCTGCAGGCATTACCGTCCTTATTGGTAATGATCTTAATAGCTGTGCCCACAACAACTGCTTAG
gcttaat putative branch site (score: 4)
tgtcccttttt putative PPT
tattttaca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctatgtagattatgacttgtgggttttacttattcaaattcaaagggctatgtactcctattttacagcttaatctagatgtgtccctttttggctgcagATCACATCCACTCTTACATTTGCTGCAGCCTGTGCATCTGCAGGCATTACCGTCCTTATTGGTAATGATCTTAATAGCTGTGCCCACAACAACTGCTTAG
ctatgta
- - - - - - tgacttg
- - - - - - - - - - - - - - - - - -aaattcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcccttt