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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaatattatgccagtttttcttgtgggtcgtgattattttttggcttatactctctgcgagaatgtgtttggttttcttttttctttttgattggaatgacacttcaatgtgcaacttgcagGTGTTCTTCATTTTCACTCTTTATAATACTTCCAACCACAATGATCAACTTAAG

Basic information

species Vitis vinifera
transcript Vv06s0004g02720.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g02720.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA12G29750.1 (Glycine max), 3'ss of exon 2
gtgagaatattatgccagtttttcttgtgggtcgtgattattttttggcttatactctctgcgagaatgtgtttggttttc--ttttttctttttgattggaatgacact---tcaatgtgcaacttgcagGTGTTCTTCATTTTCACTCTTTATAATACTTCCAACCACAATGATCAACTTAAG
                            |  ||   |   |||| ||  || || | |||  ||   | ||| | ||   |  |  | |  || ||    |  |||  ||   ||  |||||   ||||||||||||||||| |||||||| ||||| ||||| || |||||||||||  | |||
----------------------------gtatctgcacccttttctgttttttaatgtctttgattttctgtgttgtaaccgatgctctgcttgtggcgtgcgtgatgctcattctttgtgctgattgcagGTGTTCTTCATATTCACTCTCTATAACACTTCGAATCACAATGATCAGTTAAAG

upper sequence: Vv06s0004g02720.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA13G40010.1 (Glycine max), 3'ss of exon 2
gtgagaatattatgccagtttttcttgtgggtcgtgattattttttggcttatactctctgcgagaatgtgtttggttttcttttttctttttgattggaatgacacttcaatgtgcaacttgcagGTGTTCTTCATTTTCACTCTTTATAATACTTCCAACCACAATGATCAACTTAAG
                 || | |    |   |     || |||  || |||  | | |||| |          |||  | ||| |  | |   |   |  |||    |||  |||||   ||||||||||||||||| |||||||| ||||||||||  || |||||||||||  | |||
-----------------gtatctacactctttttctgttttttaatgtctttgattttctgtgttgtaaccgatggcctgcttgtggcgtgc-gtgcgtgatgctcattctctgtgctgattgcagGTGTTCTTCATATTCACTCTCTATAATACTTTGAATCACAATGATCAGTTAAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttggttttcttttttctttttgattggaatgacacttcaatgtgcaacttgcagGTGTTCTTCATTTTCACTCTTTATAATACTTCCAACCACAATGATCAACTTAAG
                  ttttgat  putative branch site (score: 4)
     ttttcttttttctttt  TA-rich tract