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...aagccagggttctggagcatcatctaagtttaagctgtcagaggcattccagatttattatgcagtaaaattgtttggatatctggatttcttcatgtagGGATTTGCTGCAGGCCTCATGCTGAGCATATCTTTCCTAGATTTGGCTCATAATGCTTTGAACTCCATCGGCTTCTTAAAAGGAAACCTTTGG
species | Vitis vinifera |
transcript | Vv06s0004g01860.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTGTAATTCTTAATGAGACTCCCAACCTGAAGATGCTTGGGCTTTTACAG GGATTTGCTGCAGGCCTCATGCTGAGCATATCTTTCCTAGATTTGGCTCATEST: gi|110693804|gb|EE070356.1|EE070356
genomic: TTGTAATTCTTAATGAGACTCCCAACCTGAAGATGCTTGGGCTTTTACAGgtaatgttca ... cttcatgtagGGATTTGCTGCAGGCCTCATGCTGAGCATATCTTTCCTAGATTTGGCTCAT
EST: TTGTAATTCTTAATGAGACTCCCAACCTGAAGATGCTTGGGCTTTTACAG GGATTTGCTGCAGGCCTCATGCTGAGCATATCTTTCCTAGATTTGGCTCATEST: gi|110689440|gb|EE065664.1|EE065664
genomic: TTGTAATTCTTAATGAGACTCCCAACCTGAAGATGCTTGGGCTTTTACAGgtaatgttca ... cttcatgtagGGATTTGCTGCAGGCCTCATGCTGAGCATATCTTTCCTAGATTTGGCTCAT
EST: TTGTAATTCTTAATGAGACTCCCAACCTGAAGATGCTTGGGCTTTTACAG GGATTTGCTGCAGGCCTCATGCTGAGCATATCTTTCCTAGATTTGGCTCATEST: gi|110698572|gb|EE076222.1|EE076222
genomic: TTGTAATTCTTAATGAGACTCCCAACCTGAAGATGCTTGGGCTTTTACAGgtaatgttca ... cttcatgtagGGATTTGCTGCAGGCCTCATGCTGAGCATATCTTTCCTAGATTTGGCTCAT
EST: TTGTAATTCTTAATGAGACTCCCAACCTGAAGATGCTTGGGCTTTTACAG GGATTTGCTGCAGGCCTCATGCTGAGCATATCTTTCCTAGATTTGGCTCAT
genomic: TTGTAATTCTTAATGAGACTCCCAACCTGAAGATGCTTGGGCTTTTACAGgtaatgttca ... cttcatgtagGGATTTGCTGCAGGCCTCATGCTGAGCATATCTTTCCTAGATTTGGCTCAT
attccagatttattatgcagtaaaattgtttggatatctggatttcttcatgtagGGATTTGCTGCAGGCCTCATGCTGAGCATATCTTTCCTAGATTTGGCTCATAATGCTTTGAACTCCATCGGCTTCTTAAAAGGAAACCTTTGG
tttcttcat CT-rich tract
agatttattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagccagggttctggagcatcatctaagtttaagctgtcagaggcattccagatttattatgcagtaaaattgtttggatatctggatttcttcatgtagGGATTTGCTGCAGGCCTCATGCTGAGCATATCTTTCCTAGATTTGGCTCATAATGCTTTGAACTCCATCGGCTTCTTAAAAGGAAACCTTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - gttctgg
- - - - - - - - -catcatc
- - - - - - - - - - - - - - - - - - - - - -gcattcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agtaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgg