Sequence
atgc intronic sequence ATGC exonic sequencegtagctctacttttgaagtgtttttttgtaaatgcaatcaattcatagtttcagaatataagaagtaaaatcatcaatctccggtcttgtatttttgacagATCTTGGCAGGTCTTTTAGATCAATATACATTTGCTGGTAACTCCCAAGCTTTAAAAATGATGACATGGATGGTTGAGCACTTCTACAAGCGTGTACAAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g01770.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA11G14020.1 (Glycine max), 3'ss of exon 2
gtagctctacttttgaagtgtttttttgtaaatgcaatcaattcatagtttcagaatataagaagtaaaatcatcaatctccggtcttgtatttttgacagATCTTGGCAGGTCTTTTAGATCAATATACATTTGCTGGTAACTCCCAAGCTTTAAAAATGATGACATGGATGGTTGAGCACTTCTACAAGCGTGTACAAA
|| | ||| || || || || | || | | | | | | | | | |||||||||||||||| || || || |||||| |||| |||||||| ||| | |||||| |||||||| | |||||||||||||| |||||||||| | || || |
-------------------gtacaatcaaaaagtggatt--ttgattacgcaagtgctttcgaccttatgttgtggaatttcaactattcagctttgacagATCTTGGCTGGCCTCTTGGATCAACATACTTTTGCTGGAAACCCTCAAGCTCTAAAAATGGTAACATGGATGGTTGATTACTTCTACAACAGAGTGCAGA
upper sequence: Vv06s0004g01770.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA12G05980.1 (Glycine max), 3'ss of exon 2
gtagctctacttttgaagtgtttttttgtaaatgcaatcaattcatag--tttcagaatataagaagtaa-aatcatcaatctccggtcttgtatttttgacagATCTTGGCAGGTCTTTTAGATCAATATACATTTGCTGGTAACTCCCAAGCTTTAAAAATGATGACATGGATGGTTGAGCACTTCTACAAGCGTGTACAAA
| ||||||| | | ||| | | ||| | | | | | | || | | || |||||||||||| || || || |||||| |||| |||||||| ||| | |||||| |||||||| | |||||||||||||| |||||||||| | || || |
-------------------------------gtacaatcaaaaagtggatttttattacgcaagtgcttttgaccttatgttgtggaatttcaactattcacagATCTTGGCTGGCCTCTTGGATCAACATACTTTTGCTGGAAACCCTCAAGCTCTAAAAATGGTAACATGGATGGTTGATTACTTCTACAACAGAGTGCAGA
upper sequence: Vv06s0004g01770.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA11G14000.1 (Glycine max), 3'ss of exon 3
gtagctctacttttgaagtgtttttttgtaaatgcaatcaattcatagtttcagaatataagaagtaaaatcatcaatctccggtcttgtatttttgacagATCTTGGCAGGTCTTTTAGATCAATATACATTTGCTGGTAACTCCCAAGCTTTAAAAATGATGACATGGATGGTTGAGCACTTCTACAAGCGTGTACAAA
||| | || ||||| ||| ||| || | || | | | | || | || | || | | | |||||||||||||| || || || || ||| |||| |||||||| ||| | |||||| |||||||| | |||||||||||||| |||||||||| | || || |
------gtacaatcaaaagtggattttgataatacaagtgcttttgaccttaatattgtgggatttcaactaattagt---------------tatgacagATCTTGGCCGGCCTCTTGGACCAACATACTTTTGCTGGAAACCCTCAAGCTCTAAAAATGGTAACATGGATGGTTGATTACTTCTACAACAGAGTCCAGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161721828|gb|FC070507.1|FC070507EST: GTTTTGAAGCCATAAAGCCGGTCTGGGCTCCTTATTACACCATACACAAG ATCTTGGCTGGTCTTTTAGATCAATATACATTTGCTGGTAACTCCCAAGCT
genomic: GTTTTGAAGCCATAAAGCCGGTCTGGGCTCCTTATTACACCATACACAAGgtagctctac ... tttttgacagATCTTGGCAGGTCTTTTAGATCAATATACATTTGCTGGTAACTCCCAAGCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agtttcagaatataagaagtaaaatcatcaatctccggtcttgtatttttgacagATCTTGGCAGGTCTTTTAGATCAATATACATTTGCTGGTAACTCCCAAGCTTTAAAAATGATGACATGGATGGTTGAGCACTTCTACAAGCGTGTACAAA
tattttt CT-rich tract
aatataagaagtaaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtagctctacttttgaagtgtttttttgtaaatgcaatcaattcatagtttcagaatataagaagtaaaatcatcaatctccggtcttgtatttttgacagATCTTGGCAGGTCTTTTAGATCAATATACATTTGCTGGTAACTCCCAAGCTTTAAAAATGATGACATGGATGGTTGAGCACTTCTACAAGCGTGTACAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA