Sequence
atgc intronic sequence ATGC exonic sequence...taaccctttaaaaaaaaaaggctatacaggatcatttgcttgtatcttggataaaaactactcaatatatcaaactcaaaaattattttattctatgcagGTTTTCAACTGTTTTGGCAGGCAGTTCTGCTTACACTTTGAGGCATTCCATCTGGGAATGGCACCTGTTTACATGGCCTTTTTGCGGTTCATGGGCGACG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g01130.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: EFJ26279 (Selaginella moellendorffii), 3'ss of exon 2
--------------------------taaccctttaaaaaaaaaaggctatacagg-atcatttgcttgtatcttggataaaaactactcaatat-atcaa---actcaaaaattattttattctatgcagGTTTTCAACTGTTTTGGCAGGCAGTTCTGCTTACACTTTGAGGCATTCCATCTGGGAATGGCACCTGTTTACATGGCCTTTTTGCGGTTCATGGGCGACG
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gtaacgttggtttcctcttggtccaatcgtttcttcgtttgatgttcttgtgctgctagcttttgaagctatgcaagcttaagtttcagaagtttgatcgagtaacccgacgactgctgtttggtttgcagGTTTTCAACTGTTATGGACAGCACTTCTGCCTACACTTTGAGGCGTTCCAGCTCGGGACAATGCCAGTTTACATGGCTTTTCTGAGATTCATGGGGGACG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttggataaaaactactcaatatatcaaactcaaaaattattttattctatgcagGTTTTCAACTGTTTTGGCAGGCAGTTCTGCTTACACTTTGAGGCATTCCATCTGGGAATGGCACCTGTTTACATGGCCTTTTTGCGGTTCATGGGCGACG
ttttattct CT-rich tract
tcaatatatcaaactc TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
taaccctttaaaaaaaaaaggctatacaggatcatttgcttgtatcttggataaaaactactcaatatatcaaactcaaaaattattttattctatgcagGTTTTCAACTGTTTTGGCAGGCAGTTCTGCTTACACTTTGAGGCATTCCATCTGGGAATGGCACCTGTTTACATGGCCTTTTTGCGGTTCATGGGCGACG
- -cccttta
- - - - -aaaaaaa
- - - - - - - - - - - - - - - - catttgc
- - - - - - - - - - - - - - - - - - - - - - - - - ataaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaactc