1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gacattcaatgctttagacatttatgtactgttctcccttgttttttcttggattggtagtgcaaatcagaatcttacgttacagattttcaaacaacagAATGAAGGAAGCTGTTAATTATCAGACACTCTATCCAAAGGATTTAGCCAAGTCTGTTGTGTCTGAAGGGGGCTGGTCAAACTTGCTG
species | Vitis vinifera |
transcript | Vv06s0004g00060.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCCTTGCCATCCACTGTTCCGGCATTTCTGTGGTCCCATCACCAAATTGA AATGAAGGAAGCTGTTAATTATCAGACACTCTCTCCAAAGGATTTAGCCAAEST: gi|110711311|gb|EE087659.1|EE087659
genomic: GCCTTGCCATCCACTGTTCCGGCATTTCTGTGGTCCCATCACCAATTTGAgtatgctttc ... caaacaacagAATGAAGGAAGCTGTTAATTATCAGACACTCTATCCAAAGGATTTAGCCAA
EST: GCCTTGCCATCCACTGTTCCGGCATTTCTGTGGTCCCATCACCAAATTGA AATGAAGGAAGCTGTTAATTATCAGACACTCTCTCCAAAGGATTTAGCCAAEST: gi|161706713|gb|FC055892.1|FC055892
genomic: GCCTTGCCATCCACTGTTCCGGCATTTCTGTGGTCCCATCACCAATTTGAgtatgctttc ... caaacaacagAATGAAGGAAGCTGTTAATTATCAGACACTCTATCCAAAGGATTTAGCCAA
EST: GCCTTGCCATCCACTGTTCCGGCATTTCTGTGGTCCCATCACCAAATTGA AATGAAGGAAGCTGTTAATTATCAGACACTCTCTCCAAAGGATEST: gi|110713034|gb|EE088602.1|EE088602
genomic: GCCTTGCCATCCACTGTTCCGGCATTTCTGTGGTCCCATCACCAATTTGAgtatgctttc ... caaacaacagAATGAAGGAAGCTGTTAATTATCAGACACTCTATCCAAAGGAT
EST: GCCTTGCCATCCACTGTTCCGGCATTTCTGTGGTCCCATCACCAAATTGA AATGAAGGAAGCTGTTAATTATCAGACACTCTCTCCAAAGGATTTAGCCAAEST: gi|27586580|gb|CB009275.1|CB009275
genomic: GCCTTGCCATCCACTGTTCCGGCATTTCTGTGGTCCCATCACCAATTTGAgtatgctttc ... caaacaacagAATGAAGGAAGCTGTTAATTATCAGACACTCTATCCAAAGGATTTAGCCAA
EST: GCCTTGCCATCCACTGTTCCGGCATTTCTGTGGTCCCATCACCAAATTGA AATGAAGGAAGCTGTTAATTATCAGACACTCTCTCCAAAGGATTTAGCCAAEST: gi|110692596|gb|EE072018.1|EE072018
genomic: GCCTTGCCATCCACTGTTCCGGCATTTCTGTGGTCCCATCACCAATTTGAgtatgctttc ... caaacaacagAATGAAGGAAGCTGTTAATTATCAGACACTCTATCCAAAGGATTTAGCCAA
EST: GCCTTGCCATCCACTGTTCCGGCATTTCTGTGGTCCCATCACCAAATTGA AATGAAGGAAGCTGTTAATTATCAGACACTCTCTCCAAAGGATTTAGCCAAEST: gi|71859349|gb|DT008404.1|DT008404
genomic: GCCTTGCCATCCACTGTTCCGGCATTTCTGTGGTCCCATCACCAATTTGAgtatgctttc ... caaacaacagAATGAAGGAAGCTGTTAATTATCAGACACTCTATCCAAAGGATTTAGCCAA
EST: GCCTTGCCATCCACTGTTCCGGCATTTCTGTGGTCCCATCACCAAATTGA AATGAAGGAAGCTGTTAATTATCAGACACTCTCTCCAAAGGATTTAGCCAAEST: gi|71857308|gb|DT006363.1|DT006363
genomic: GCCTTGCCATCCACTGTTCCGGCATTTCTGTGGTCCCATCACCAATTTGAgtatgctttc ... caaacaacagAATGAAGGAAGCTGTTAATTATCAGACACTCTATCCAAAGGATTTAGCCAA
EST: GCCTTGCCATCCACTGTTCCGGCATTTCTGTGGTCCCATCACCAAATTGA AATGAAGGAAGCTGTTAATTATCAGACACTCTCTCCAAAGGATTTAGCCAAEST: gi|161716048|gb|FC069121.1|FC069121
genomic: GCCTTGCCATCCACTGTTCCGGCATTTCTGTGGTCCCATCACCAATTTGAgtatgctttc ... caaacaacagAATGAAGGAAGCTGTTAATTATCAGACACTCTATCCAAAGGATTTAGCCAA
EST: GCCTTGCCATCCACTGTTCCGGCATTTCTGTGGTCCCATCACCAAATTGA AATGAAGGAAGCTGTTAATTATCAGACACTCTCTCCAAAGGATTTAGCCAAEST: gi|294966527|gb|GW837662.1|GW837662
genomic: GCCTTGCCATCCACTGTTCCGGCATTTCTGTGGTCCCATCACCAATTTGAgtatgctttc ... caaacaacagAATGAAGGAAGCTGTTAATTATCAGACACTCTATCCAAAGGATTTAGCCAA
EST: GCCTTGCCATCCACTGTTCCGGCATTTCTGTGGTCCCATCACCAAATTGA AATGAAGGAAGCTGTTAATTATCAGACACTCTCTCCAAAGGATTTAGCCAAEST: gi|110693463|gb|EE069714.1|EE069714
genomic: GCCTTGCCATCCACTGTTCCGGCATTTCTGTGGTCCCATCACCAATTTGAgtatgctttc ... caaacaacagAATGAAGGAAGCTGTTAATTATCAGACACTCTATCCAAAGGATTTAGCCAA
EST: GCCTTGCCATCCACTGTTCCGGCATTTCTGTGGTCCCATCACCAAATTGA AATGAAGGAAGCTGTTAATTATCAGACACTCTCTCCAAAGGATTTAGCCAAEST: gi|110688262|gb|EE066614.1|EE066614
genomic: GCCTTGCCATCCACTGTTCCGGCATTTCTGTGGTCCCATCACCAATTTGAgtatgctttc ... caaacaacagAATGAAGGAAGCTGTTAATTATCAGACACTCTATCCAAAGGATTTAGCCAA
EST: GCCTTGCCATCCACTGTTCCGGCATTTCTGTGGTCCCATCACCAAATTGA AATGAAGGAAGCTGTTAATTATCAGACACTCTCTCCAAAGGATTTAGCCAA
genomic: GCCTTGCCATCCACTGTTCCGGCATTTCTGTGGTCCCATCACCAATTTGAgtatgctttc ... caaacaacagAATGAAGGAAGCTGTTAATTATCAGACACTCTATCCAAAGGATTTAGCCAA
ttcttggattggtagtgcaaatcagaatcttacgttacagattttcaaacaacagAATGAAGGAAGCTGTTAATTATCAGACACTCTATCCAAAGGATTTAGCCAAGTCTGTTGTGTCTGAAGGGGGCTGGTCAAACTTGCTG
atcttac putative branch site (score: 3)
ttttc putative PPT
attttcaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gacattcaatgctttagacatttatgtactgttctcccttgttttttcttggattggtagtgcaaatcagaatcttacgttacagattttcaaacaacagAATGAAGGAAGCTGTTAATTATCAGACACTCTATCCAAAGGATTTAGCCAAGTCTGTTGTGTCTGAAGGGGGCTGGTCAAACTTGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - caatgct
- - - - - - - - - - - tatgtac
- - - - - - - - - - - - - - - -ttctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatcaga