Sequence
atgc intronic sequence ATGC exonic sequencegtatgtatgaattatgatgctactgcatatgtattgcgttactaaaacttaaaaagtcacctcttgattttcctttgccaaggctcacatcaatgatcaatgtaccttttccttaagcagTTGGACGACTGGGTTCTTTGCCGGATCTACAACAAAAAGAACAATTGGAGGGAGAAGATGCAACACCAAATGAACCAACTATTACCTCATGAACCTATTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g00020.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: EFJ07271 (Selaginella moellendorffii), 3'ss of exon 1
-------------------gtatgtatgaat-tatgatgctactgcatatgtat-tgcgttactaaaac-----ttaaaaagtcacctcttgattttcctttgccaaggctcacatcaatga---tcaatgtaccttttccttaagcagTTGGACGACTGGGTTCTTTGCCGGATCTACAACAAAAAGAACAATTGGAGGGAGAAGATGCAACACCAAATGAACCAACTATTACCTCATGAACCTATTG
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gtaagtgatagagccttgtgtgttcttgagcgttctatgttatattatatggatctgtgttcttggatcaatctctcgcgagggagagttcttttcggcaatcgcgggatgggttttgatgggtttttcttcctctttcttttggtcagCTGGACGACTGGGTTCTCTGCCGGATCTACAAGAAGCA-ATCGAGCGATTGGAAGAGCCCCGCGGCCTCA------------------------------
upper sequence: Vv06s0004g00020.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: EFJ07841 (Selaginella moellendorffii), 3'ss of exon 1
-------------------gtatgtatgaat-tatgatgctactgcatatgtat-tgcgttactaaaac-----ttaaaaagtcacctcttgattttcctttgccaaggctcacatcaatga---tcaatgtaccttttccttaagcagTTGGACGACTGGGTTCTTTGCCGGATCTACAACAAAAA---GAACAATTGGAGGGAGAAGATGCAACACCAAATGAACCAACTATTACCTCATGAACCTATTG-
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gtaagtgatagagccttgtgttttcttgagcgttctatgttatattatatggatctgtgttcttggatcaatctctcgcgagggagaggttttttcggcaatcgcgggatgggttttgatgggtttttcttcctctttcttttggtcagCTGGACGACTGGGTTCTCTGCCGGATCTACAAGAAGCAATCGAGCGATTGGAAGAGCCC--CGCGGCCTCACAAGAAGCGCCAA--GCCGCGAGAACGTGAAAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161716761|gb|FC065584.1|FC065584EST: ACAGGCTTGCCCAACCAAATCGTTCATCTGATAAAAAGAGCAGTTTAAGG TTGGACGACTGGGTTCTTTGCCGGATCTACAACAAAAAGAACAATTGGAGG
genomic: ACAGGCTTGCCCAACCAAATCGTTCATCTGATAAAAAGAGCAGTTTAAGGgtatgtatga ... ccttaagcagTTGGACGACTGGGTTCTTTGCCGGATCTACAACAAAAAGAACAATTGGAGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gattttcctttgccaaggctcacatcaatgatcaatgtaccttttccttaagcagTTGGACGACTGGGTTCTTTGCCGGATCTACAACAAAAAGAACAATTGGAGGGAGAAGATGCAACACCAAATGAACCAACTATTACCTCATGAACCTATTG
ggctcac putative branch site (score: 3)
tgtaccttttcctt putative PPT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgtatgaattatgatgctactgcatatgtattgcgttactaaaacttaaaaagtcacctcttgattttcctttgccaaggctcacatcaatgatcaatgtaccttttccttaagcagTTGGACGACTGGGTTCTTTGCCGGATCTACAACAAAAAGAACAATTGGAGGGAGAAGATGCAACACCAAATGAACCAACTATTACCTCATGAACCTATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG