Sequence
atgc intronic sequence ATGC exonic sequence...tttacctgtgattattatttcttccaagcagcttcttgggttggctgttgtatttctgtatttgtctatttgctaagaagtcctctatagttatatccagGTTGCAATTCCTGTGGTTCCTACCATCAGAGTGTTGGTTACATTTACAAAGTTTGAAGAACTACAGCCGGTGGATGAGTTTACAACACCCCCTTCAAGCC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0136g00240.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA20G18890.1 (Glycine max), 3'ss of exon 1
--tttacctgtgattattatttcttccaagcagcttcttgggttggctgttgtatttctgtatttgtctatt-tgctaagaagtcctctatagttatatccagGTTGCAATTCCTGTGGTTCCTACCATCAGAGTGTTGGTTACATTTACAAAGTTTGAAGAACTACAGCCGGTGGATGAGTTTACAACACCCCCTTCAAGCC
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attttaaatcacaggattgctatcttggctttttttttcttcttgcatgttttctttct---cttgtatatgatgttaaattcatttccccttgtatatccagGTTGCCATCCCTGTGGTTCCCACCATCAGAGTATTGGTTACTTTTACAAAGTTTGAAGAACTAGAGCCAGTAGACGAATTTGCAACACCACCATCAAGCC
upper sequence: Vv05s0136g00240.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA10G24550.1 (Glycine max), 3'ss of exon 1
-tttacctgtgattattatttct-tccaagcagcttcttgggttggctgttgtatttctgtatttgtctatttgctaagaagtcctctatagttatatccagGTTGCAATTCCTGTGGTTCCTACCATCAGAGTGTTGGTTACATTTACAAAGTTTGAAGAACTACAGCCGGTGGATGAGTTTACAACACCCCCTTCAAGCC
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acatcactg-gattactatctttgttggcttttctttttctcttgcatgttttctttctctttgtatatgatgttaaatccatttccccttgt-atatccagGTTGCCATCCCTGTGGTTCCCACCATCAGAGTATTGGTTACTTTTACCAAATTTGAAGAACTAGAACCAGTAGATGAATTTGCAACGCCACCATCGAGCC
upper sequence: Vv05s0136g00240.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT3G24210.1 (Arabidopsis thaliana), 3'ss of exon 2
tttacctgtgattattatttcttccaagcagcttcttgggttggctgttgtatttctgtatttgtctatttgcta-agaagtcctctatagttatatccagGTTGCAATTCCTGTGGTTCCTACCATCAGAGTGTTGGTTACATTTACAAAGTTTGAAGAACTACAGCCGGTGGATGAGTTTACAACACCCCCTTCAAGCC
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---gtatgttgtcgtttcatgttaagagctaatcttaatgtt--cttgaagatgagtttttttttctttttcttatagagattgtttgtgaatgta----gGTTGCTATTCCAGTGGTACCTACAATAAAAGTGCTTGTTACATTCACAAAGTTTGAAGAAATTGAGCCTGTAGATGAGTTTAAGACGCCTCTCTCGAGCC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgttgtatttctgtatttgtctatttgctaagaagtcctctatagttatatccagGTTGCAATTCCTGTGGTTCCTACCATCAGAGTGTTGGTTACATTTACAAAGTTTGAAGAACTACAGCCGGTGGATGAGTTTACAACACCCCCTTCAAGCC
tatagttatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttacctgtgattattatttcttccaagcagcttcttgggttggctgttgtatttctgtatttgtctatttgctaagaagtcctctatagttatatccagGTTGCAATTCCTGTGGTTCCTACCATCAGAGTGTTGGTTACATTTACAAAGTTTGAAGAACTACAGCCGGTGGATGAGTTTACAACACCCCCTTCAAGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- tacctgt
- - - - - - - - - - - tccaagc
- - - - - - - - - - - - - - - - - - -gggttgg
- - - - - - - - - - - - - - - - - - - - - - ctgttgt