1 5' 3' | 2 5' 3' | 3 5' 3' |
...ctaggtgttgctctgatgcctcaatcccttgactgccctactttagtgagctgaccttttttgggttgtttggaagataatacttaataatattgttttgCAGTGGATATGGAGACCCTTATAGAAGACAAAGTTGTAACTACAGAAAGTTCTGCCGGAGGGGAATCTGGTTTATGTGAAGTTGACACAAATCAAGAACC
species | Vitis vinifera |
transcript | Vv05s0102g00390.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
gtgagctgaccttttttgggttgtttggaagataatacttaataatattgttttgCAGTGGATATGGAGACCCTTATAGAAGACAAAGTTGTAACTACAGAAAGTTCTGCCGGAGGGGAATCTGGTTTATGTGAAGTTGACACAAATCAAGAACC
ttgtttt CT-rich tract
aagataatacttaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctaggtgttgctctgatgcctcaatcccttgactgccctactttagtgagctgaccttttttgggttgtttggaagataatacttaataatattgttttgCAGTGGATATGGAGACCCTTATAGAAGACAAAGTTGTAACTACAGAAAGTTCTGCCGGAGGGGAATCTGGTTTATGTGAAGTTGACACAAATCAAGAACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- -ggtgttg
- - - - - - - gatgcct
- - - - - - - - - - -caatccc
- - - - - - - - - - - - - - - -actgccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagataa