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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatatgcattccgcattttcatcaatccaatactgtaaattatggtcgacatattttcttaaacacgctaaaaagaaaaaaataacttcaatgtttatgcagGCAACTGCTGGTTTAAGGGCATTGGGAATTGATGCATCTGATAGAATTTTGCAAGCG

Basic information

species Vitis vinifera
transcript Vv05s0094g01630.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161713812|gb|FC063447.1|FC063447
EST:     AAAATGTTGTTCCAGCAGATTTGCGTCGCAAGACACCGGTCAAAGTTGGG                         GCAACTGCTGGTTTAAGGGCATTGGGAATTGATGCATCTGATAGAATTTTG
genomic: AAAATGTTGTTCCAGCAGATTTGCGTCGCAAGACACCGGTCAAAGTTGGGgtaatatgca ... gtttatgcagGCAACTGCTGGTTTAAGGGCATTGGGAATTGATGCATCTGATAGAATTTTG
EST: gi|71869640|gb|DT018695.1|DT018695
EST:     AAAATGTTGTTCCAGCAGATTTGCGTCGCAAGACACCGGTCAAAGTTGGG                         GCAACTGCTGGTTTAAGGGCATTGGGAATTGATGCATCTGATAGAATTTTG
genomic: AAAATGTTGTTCCAGCAGATTTGCGTCGCAAGACACCGGTCAAAGTTGGGgtaatatgca ... gtttatgcagGCAACTGCTGGTTTAAGGGCATTGGGAATTGATGCATCTGATAGAATTTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacatattttcttaaacacgctaaaaagaaaaaaataacttcaatgtttatgcagGCAACTGCTGGTTTAAGGGCATTGGGAATTGATGCATCTGATAGAATTTTGCAAGCG
                                aaataac  putative branch site (score: 2)
                     taaaaagaaaaaaata  TA-rich tract