1 5' 3' | 2 5' 3' | 3 5' 3' |
...gtttgctattctcatggtattttagttgatttcattgtactaaccttgttctatttgtagactggagtgctttatctataactctgatgtgctactgcagATTACCTATTCCGGTGCAATACTGGAGGTGTGCATGAGGAAACTGGTTTTCTATCCCGAAGTTGTTGGTTTTATTGAAGAAGAGAAGGATAAATTCCCTT
species | Vitis vinifera |
transcript | Vv05s0094g00490.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATTGTTTGAAGTGTTGCACAGAGGATTCTGATGATTCCATGAGCAAG ATTACCTATTCCGGTGCAATACTGGAGGTGTGCATGAGGAAACTGGTTTTCEST: gi|110692617|gb|EE072063.1|EE072063
genomic: ATTGTTTGAAGTGTTGCACAGAGGATTCTGATGATTCCATGAGCAAGgtatggatga ... gctactgcagATTACCTATTCCGGTGCAATACTGGAGGTGTGCATGAGGAAACTGGTTTTC
EST: CTGATTGTTTGAAGTGTTGCACAGAGGATTCTGATGATTCCATGAGCAAG ATTACCTATTCCGGTGCAATACTGGAGGTGTGCATGAGGAAACTGGTTTTCEST: gi|110692825|gb|EE068530.1|EE068530
genomic: CTGATTGTTTGAAGTGTTGCACAGAGGATTCTGATGATTCCATGAGCAAGgtatggatga ... gctactgcagATTACCTATTCCGGTGCAATACTGGAGGTGTGCATGAGGAAACTGGTTTTC
EST: CTGATTGTTTGAAGTGTTGCACAGAGGATTCTGATGATTCCATGAGCAAG ATTACCTATTCCGGTGCAATACTGGAGGTGTGCATGAGGAAACTGGTTTTCEST: gi|30129296|gb|CB914635.1|CB914635
genomic: CTGATTGTTTGAAGTGTTGCACAGAGGATTCTGATGATTCCATGAGCAAGgtatggatga ... gctactgcagATTACCTATTCCGGTGCAATACTGGAGGTGTGCATGAGGAAACTGGTTTTC
EST: CTGATTGTTTGAAGTGTTGCACAGAGGATTCTGATGATTCCATGAGCAAG ATTACCTATTCCGGTGCAATACTGGAGGTGTGCATGAGGAAACTGGTTTTCEST: gi|26265467|gb|CA816530.1|CA816530
genomic: CTGATTGTTTGAAGTGTTGCACAGAGGATTCTGATGATTCCATGAGCAAGgtatggatga ... gctactgcagATTACCTATTCCGGTGCAATACTGGAGGTGTGCATGAGGAAACTGGTTTTC
EST: CTGATTGTTTGAAGTGTTGCACAGAGGACTCTGATGATTCCATGAGCAAG ATTACCTATTCCGGTGCAATACTGGAGGTGTGCATGAGGAAACTGGTTTTC
genomic: CTGATTGTTTGAAGTGTTGCACAGAGGATTCTGATGATTCCATGAGCAAGgtatggatga ... gctactgcagATTACCTATTCCGGTGCAATACTGGAGGTGTGCATGAGGAAACTGGTTTTC
ttgttctatttgtagactggagtgctttatctataactctgatgtgctactgcagATTACCTATTCCGGTGCAATACTGGAGGTGTGCATGAGGAAACTGGTTTTCTATCCCGAAGTTGTTGGTTTTATTGAAGAAGAGAAGGATAAATTCCCTT
tttatctataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgctattctcatggtattttagttgatttcattgtactaaccttgttctatttgtagactggagtgctttatctataactctgatgtgctactgcagATTACCTATTCCGGTGCAATACTGGAGGTGTGCATGAGGAAACTGGTTTTCTATCCCGAAGTTGTTGGTTTTATTGAAGAAGAGAAGGATAAATTCCCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - ctcatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgatgt