Sequence
atgc intronic sequence ATGC exonic sequence...tcctatcagtaaaggaaaaaagaaaaggtttcctggtggtatgttcgtggtgtgccccaaacccatatgtattaactctcgctcattggttaaattgcagTATATATACCTCCTTGATGGTGAGGAGATGGTTCGGCTGGCAAGGGACTACATCAAATATCTTTTTGGAGGACAGAAGAGTATTCGGTTACAGCGTGCAA
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71867191|gb|DT016246.1|DT016246EST: TGGATGAAGCAGTGCAAGTGTTCTTAGCAACTGTTGCCTTTATATTGCTG TATATATACCTCCTTGATGGTGAGGAGATGGTTCGGCTGGCAAGGGACTAC
genomic: TGGATGAAGCAGTGCAAGTGTTCTTAGCAACTGTTGCCTTTATATTGCTGgtaataatat ... taaattgcagTATATATACCTCCTTGATGGTGAGGAGATGGTTCGGCTGGCAAGGGACTAC
EST:
gi|110733173|gb|EE109135.1|EE109135EST: TGGATGAAGTAGTGCAAGTGTTCTTAGCAACTGTTGCCTTTATATTGCTG TATATATACCTCCTTGATGGTGAGGAGATGGTTCGGCTGGCAAGGGACTAC
genomic: TGGATGAAGCAGTGCAAGTGTTCTTAGCAACTGTTGCCTTTATATTGCTGgtaataatat ... taaattgcagTATATATACCTCCTTGATGGTGAGGAGATGGTTCGGCTGGCAAGGGACTAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cgtggtgtgccccaaacccatatgtattaactctcgctcattggttaaattgcagTATATATACCTCCTTGATGGTGAGGAGATGGTTCGGCTGGCAAGGGACTACATCAAATATCTTTTTGGAGGACAGAAGAGTATTCGGTTACAGCGTGCAA
tattaac putative branch site (score: 1)
atatgtattaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tcctatcagtaaaggaaaaaagaaaaggtttcctggtggtatgttcgtggtgtgccccaaacccatatgtattaactctcgctcattggttaaattgcagTATATATACCTCCTTGATGGTGAGGAGATGGTTCGGCTGGCAAGGGACTACATCAAATATCTTTTTGGAGGACAGAAGAGTATTCGGTTACAGCGTGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
-cctatca
- - - - - aaaggaa
- - - - - - - - - -aagaaaa
- - - - - - - - - - - - - - -ttcctgg
- - - - - - - - - - - - - - - - - - -ggtatgt
- - - - - - - - - - - - - - - - - - - - - - - - - -gtgcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaccca