Sequence
atgc intronic sequence ATGC exonic sequence...tatagtgcaataattgatcttggttgtttagccctcgatgctgctcagatggtcgaattagatgctattttttattgtctacctagttttgtatttgcagGACATCAAATCTTCCAGCATTCTTTGTTTTTGGGAAGGCACCCATCAGTATATCTAATTGTGCTGAGAATTTATCCACCTACGCATTGACTCAAGGCAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0094g00370.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AC217358.3_FGT003 (Zea mays), 3'ss of exon 2
--------------------tatagtgcaataattgatcttggttgtttagccctcgatgctgctcag-atggtcgaatta-gatgctattttttattgtctacctagttttgtatttgcagGACATCAAATCTTCCAGCATTCTTTGTTTTTGGGAAGGCACCCATCAGTATATCTAATTGTGCTGAGAATTTATCCACCTACGCATTGACTCAAGGCAAG
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gtgagcctctccgtctaaaaagtttgataacaatttccccgacttgttgggaaccattcgttgtgtgctatcatcagtttgtgctaacactaccttttgtgcgggcaacttg--aactgcagAACATCAAATTTGCCAGCTTTCTTTGTATTTGGGAAGGCACCGTTGGATGTCCACGCATGTGCCGGCACATTGCTGGAGTGCTCAAGGAAAAGCAATAAG
upper sequence: Vv05s0094g00370.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT3G59630.1 (Arabidopsis thaliana), 3'ss of exon 2
tatagtgcaataattgatcttggttgtttagccctcgatgctgctcagatggtcgaattagatgctattttttattgtctacctagttttgtatttgcagGACATCAAATCTTCCAGCATTCTTTGTTTTTGGGAAGGCACCCATCAGTATATCTAATTGTGCTGAGAATTTATCCACCTACGCATTGACTCAAGGCAAG
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----gtg-agtcataaaccct--tttcttcatctatgtaattgctttaaattcccttgttgaaacaatgtcttattgtgaggtt--ctatgttttcacagGACATCAGTTCTTCCAGCATTCTTCGTTTTTGGGAAAGCTTCGATAAACGTCTCCAGCTGTGTTAAGCATTTGATAGATTATGCGTCAAAGAGCGATAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71860933|gb|DT009988.1|DT009988EST: CATATTAATGCTGACTGCGTTGTTCATTATGGACACACATGTTTGAGTCC GACATCAAATCTTCCAGCATTCTTTGTTTTTGGGAAGGCACCCATCAGTAT
genomic: CATATTAATGCTGACTGCGTTGTTCATTATGGACACACATGTTTGAGTCCgtgagtattg ... gtatttgcagGACATCAAATCTTCCAGCATTCTTTGTTTTTGGGAAGGCACCCATCAGTAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cagatggtcgaattagatgctattttttattgtctacctagttttgtatttgcagGACATCAAATCTTCCAGCATTCTTTGTTTTTGGGAAGGCACCCATCAGTATATCTAATTGTGCTGAGAATTTATCCACCTACGCATTGACTCAAGGCAAG
aattagatgctatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tatagtgcaataattgatcttggttgtttagccctcgatgctgctcagatggtcgaattagatgctattttttattgtctacctagttttgtatttgcagGACATCAAATCTTCCAGCATTCTTTGTTTTTGGGAAGGCACCCATCAGTATATCTAATTGTGCTGAGAATTTATCCACCTACGCATTGACTCAAGGCAAG
- - - gcaataa
- - - - - - - - - - tggttgt
- - - - - - - - - - - - - - -agccctc
- - - - - - - - - - - - - - - - - - gatgctg
- - - - - - - - - - - - - - - - - - - - - - -cagatgg