1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tcgtattgaactctcttaatagtatttaagagtactcttcttaaataaattatttctcttggagtttgaagctaacaattctacaaatattttgccttagTTTCGCGCATTGAAGCCCAGAGTGAGCAGCTTGACATGTACATGCAGCTTGATGTGAATACTGAGATATATCCTATGCATGCTGGGGAGAAATTTGCAAT
species | Vitis vinifera |
transcript | Vv05s0094g00120.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CATATTTAAGGTCATTCAAATTGACCCAGATGGGAAAAAGTTTGATAAAG TTTCGCGCATTGAAGCCCAGAGTGAGCAGCTTGACATGTACATGCAGCTTGEST: gi|110690807|gb|EE068301.1|EE068301
genomic: CATATTTAAGGTCATTCAAATTGACCCAGATGGGAAAAAGTTTGATAAAGgtatattttt ... tttgccttagTTTCGCGCATTGAAGCCCAGAGTGAGCAGCTTGACATGTACATGCAGCTTG
EST: CATATTTAAGGTCATTCAAATTGACCCAGATGGGAAAAAGTTTGATAAAG TTTCGCGCATTGAAGCCCAGAGTGAGCAGCTTGACATGTACATGCAGCTTGEST: gi|32270657|gb|CD719816.1|CD719816
genomic: CATATTTAAGGTCATTCAAATTGACCCAGATGGGAAAAAGTTTGATAAAGgtatattttt ... tttgccttagTTTCGCGCATTGAAGCCCAGAGTGAGCAGCTTGACATGTACATGCAGCTTG
EST: CATATTTAAGGTCATTCAAATTGACCCAGATGGGAAAAAGTTTGATAAAG TTTCGCGCATTGAAGCCCAGAGTGAGCAGCTTGACATGTACATGCAGCTTGEST: gi|110716962|gb|EE092400.1|EE092400
genomic: CATATTTAAGGTCATTCAAATTGACCCAGATGGGAAAAAGTTTGATAAAGgtatattttt ... tttgccttagTTTCGCGCATTGAAGCCCAGAGTGAGCAGCTTGACATGTACATGCAGCTTG
EST: CATATTTAAGGTCATTCAAATTGACCCAGATGGGAAAAAGTTTGATAAAG TTTCGCGCATTGAAGCCCAGAGTGAGCAGCTTGACATGTACATGCAGCTTGEST: gi|32249091|gb|CD714910.1|CD714910
genomic: CATATTTAAGGTCATTCAAATTGACCCAGATGGGAAAAAGTTTGATAAAGgtatattttt ... tttgccttagTTTCGCGCATTGAAGCCCAGAGTGAGCAGCTTGACATGTACATGCAGCTTG
EST: CATATTTAAGGTCATTCAAATTGACCCAGATGGGAAAAAGTTTGATAAAG TTTCGCGCATTGAAGCCCAGAGTGAGCAGCTTGACATGTACATGCAGCTTGEST: gi|32267477|gb|CD716440.1|CD716440
genomic: CATATTTAAGGTCATTCAAATTGACCCAGATGGGAAAAAGTTTGATAAAGgtatattttt ... tttgccttagTTTCGCGCATTGAAGCCCAGAGTGAGCAGCTTGACATGTACATGCAGCTTG
EST: CATATTTAAGGTCATTCAAATTGACCCAGATGGGAAAAAGTTTGATAAAG TTTCGCGCATTGAAGCCCAGAGTGAGCAGCTTGACATGTACATGCAGCTTGEST: gi|110380589|gb|EC945864.1|EC945864
genomic: CATATTTAAGGTCATTCAAATTGACCCAGATGGGAAAAAGTTTGATAAAGgtatattttt ... tttgccttagTTTCGCGCATTGAAGCCCAGAGTGAGCAGCTTGACATGTACATGCAGCTTG
EST: CATATTTAAGGTCATTCAAATTGACCCAGATGGGAAAAAGTTTGATAAAG TTTCGCGCATTGAAGCCCAGAGTGAGCAGCTTGACATGTACATGCAGCTTGEST: gi|110413303|gb|EC979082.1|EC979082
genomic: CATATTTAAGGTCATTCAAATTGACCCAGATGGGAAAAAGTTTGATAAAGgtatattttt ... tttgccttagTTTCGCGCATTGAAGCCCAGAGTGAGCAGCTTGACATGTACATGCAGCTTG
EST: CATATTTAAGGTCATTCAAATTGACCCAGATGGGAAAAAGTTTGATAAAG TTTCGCGCATTGAAGCCCAGAGTGAGCAGCTTGACATGTACATGCAGCTTGEST: gi|110384870|gb|EC949337.1|EC949337
genomic: CATATTTAAGGTCATTCAAATTGACCCAGATGGGAAAAAGTTTGATAAAGgtatattttt ... tttgccttagTTTCGCGCATTGAAGCCCAGAGTGAGCAGCTTGACATGTACATGCAGCTTG
EST: CATATTTAAGGTTATTCAAATTGACCCAGATGGGAAAAAGTTTGATAAAG TTTCGCGCATTGAAGCCCAGAGTGAGCAGCTTGACATGTACATGCAGCTTGEST: gi|30322823|gb|CD006085.1|CD006085
genomic: CATATTTAAGGTCATTCAAATTGACCCAGATGGGAAAAAGTTTGATAAAGgtatattttt ... tttgccttagTTTCGCGCATTGAAGCCCAGAGTGAGCAGCTTGACATGTACATGCAGCTTG
EST: CATATTTAAGGTCATTCAAATTGACCCAGATGGGAAAAAGTTTGATAAAG TTTCGCGCATTGAAGCCCAGAGTGAGCAGCTTGACATGTACATGCAGCTTGEST: gi|77582206|gb|DV220065.1|DV220065
genomic: CATATTTAAGGTCATTCAAATTGACCCAGATGGGAAAAAGTTTGATAAAGgtatattttt ... tttgccttagTTTCGCGCATTGAAGCCCAGAGTGAGCAGCTTGACATGTACATGCAGCTTG
EST: CATATTTAAGGTCATTCAAATTGACCCAGATGGGAAAAAGTTTGATAAAG TTTCGCGCATTGAAGCCCAGAGTGAGCAGCTTGACATGTACATGCAGCTTGEST: gi|110420055|gb|EC986316.1|EC986316
genomic: CATATTTAAGGTCATTCAAATTGACCCAGATGGGAAAAAGTTTGATAAAGgtatattttt ... tttgccttagTTTCGCGCATTGAAGCCCAGAGTGAGCAGCTTGACATGTACATGCAGCTTG
EST: CATATTTAAGGTCATTCAAATTGACCCAGATGGGAAAAAGTTTGATAAAG TTTCGCGCATTGAAGCCCAGAGTGAGCAGCTTGACATGTACATGCAGCTTGEST: gi|110400610|gb|EC967176.1|EC967176
genomic: CATATTTAAGGTCATTCAAATTGACCCAGATGGGAAAAAGTTTGATAAAGgtatattttt ... tttgccttagTTTCGCGCATTGAAGCCCAGAGTGAGCAGCTTGACATGTACATGCAGCTTG
EST: CATATTTAAGGTCATTCAAATTGACCCAGATGGGAAAAAGTTTGATAAAG TTTCGCGCATTGAAGCCCAGAGTGAGCAGCTTGACATGTACATGCAGCTTGEST: gi|37187995|gb|CF607346.1|CF607346
genomic: CATATTTAAGGTCATTCAAATTGACCCAGATGGGAAAAAGTTTGATAAAGgtatattttt ... tttgccttagTTTCGCGCATTGAAGCCCAGAGTGAGCAGCTTGACATGTACATGCAGCTTG
EST: CATATTTAAGGTCATTCAAATTGACCCAGATGGGAAAAAGTTTGATAAAG TTTCGCGCATTGAAGCCCAGAGTGAGCAGCTTGACATGTACATGCAGCTTGEST: gi|110372667|gb|EC936851.1|EC936851
genomic: CATATTTAAGGTCATTCAAATTGACCCAGATGGGAAAAAGTTTGATAAAGgtatattttt ... tttgccttagTTTCGCGCATTGAAGCCCAGAGTGAGCAGCTTGACATGTACATGCAGCTTG
EST: CATATTTAAGGTCATTCAAATTGACCCAGATGGGAAAAAGTTTGATAAAG TTTCGCGCATTGAAGCCCAGAGTGAGCAGCTTGACATGTACATGCAGCTTG
genomic: CATATTTAAGGTCATTCAAATTGACCCAGATGGGAAAAAGTTTGATAAAGgtatattttt ... tttgccttagTTTCGCGCATTGAAGCCCAGAGTGAGCAGCTTGACATGTACATGCAGCTTG
taaattatttctcttggagtttgaagctaacaattctacaaatattttgccttagTTTCGCGCATTGAAGCCCAGAGTGAGCAGCTTGACATGTACATGCAGCTTGATGTGAATACTGAGATATATCCTATGCATGCTGGGGAGAAATTTGCAAT
agctaac putative branch site (score: 2)
ttttgcctt putative PPT
taacaattctacaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcgtattgaactctcttaatagtatttaagagtactcttcttaaataaattatttctcttggagtttgaagctaacaattctacaaatattttgccttagTTTCGCGCATTGAAGCCCAGAGTGAGCAGCTTGACATGTACATGCAGCTTGATGTGAATACTGAGATATATCCTATGCATGCTGGGGAGAAATTTGCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaaata