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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtgtttgttaattgtaataagttttttttgcttccaatgttaatagtattgataattaataaattttgaagtccgaaactttacatttttaattcagGAAGAAGATGAAGGCACAGGCAAGCCAAATAACACTGCAACTGCTAATAAGTTAAAATCTTCAAAACCAAATACTGAGAACACGCCCAAAGACGTTCCGA

Basic information

species Vitis vinifera
transcript Vv05s0094g00070.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|294965056|gb|GW838859.1|GW838859
EST:     TCTCAGACAATGATACTGGACCTAGTGATCGTATAGACAAGTCTGTTGAG                         GAAGAAGATGAAGGCACAGGCAAGCCAAATAACACTGCAACTGCTAATAAG
genomic: TCTCAGACAATGATACTGGACCTAGTGATCGTATAGACAAGTCTGTTGAGgtagtgtttg ... tttaattcagGAAGAAGATGAAGGCACAGGCAAGCCAAATAACACTGCAACTGCTAATAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atagtattgataattaataaattttgaagtccgaaactttacatttttaattcagGAAGAAGATGAAGGCACAGGCAAGCCAAATAACACTGCAACTGCTAATAAGTTAAAATCTTCAAAACCAAATACTGAGAACACGCCCAAAGACGTTCCGA
                                            ttttaat  putative branch site (score: 3)
                                         cattttt  CT-rich tract
     attgataattaataaa  TA-rich tract