Sequence
atgc intronic sequence ATGC exonic sequence...cgtcatcccccaattctttcttgagcaaatcccaagttaatttcaagttaatctcaagtacagatacagattgttcaaacattttgtttgatggatgtagGAAAGGTTGAACAGATCATTGATGGTCTGCCAGGACAAGTTTGAGTCAGCCAAGCTCCAACAGATCAGAACTGATGCCATGAAGGATATGGAGTCATGTG
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|87586132|gb|DY474572.1|DY474572EST: CAGTTGTTAATGCTCAAGCTCTGGTTGAGAATGAGATGGCTAAATTTCAA GAAAGGTTGAACAGATCATTGATGGTCTGCCAGGACAAGTTTGAGTCAGCC
genomic: CAGTTGTTAATGCTCAAGCTCTGGTTGAGAATGAGATGGCTAAATTTCAAgtaagctgcc ... atggatgtagGAAAGGTTGAACAGATCATTGATGGTCTGCCAGGACAAGTTTGAGTCAGCC
EST:
gi|110383512|gb|EC947890.1|EC947890EST: CAGTTGTTAATGCTCAAGCTCTGGTTGAGAATGAGATGGCTAAATTTCAA GAAAGGTTGAACAGATCATTGATGGTCTGCCAGGACAAGTTTGAGTCAGCC
genomic: CAGTTGTTAATGCTCAAGCTCTGGTTGAGAATGAGATGGCTAAATTTCAAgtaagctgcc ... atggatgtagGAAAGGTTGAACAGATCATTGATGGTCTGCCAGGACAAGTTTGAGTCAGCC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agttaatctcaagtacagatacagattgttcaaacattttgtttgatggatgtagGAAAGGTTGAACAGATCATTGATGGTCTGCCAGGACAAGTTTGAGTCAGCCAAGCTCCAACAGATCAGAACTGATGCCATGAAGGATATGGAGTCATGTG
aaacatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cgtcatcccccaattctttcttgagcaaatcccaagttaatttcaagttaatctcaagtacagatacagattgttcaaacattttgtttgatggatgtagGAAAGGTTGAACAGATCATTGATGGTCTGCCAGGACAAGTTTGAGTCAGCCAAGCTCCAACAGATCAGAACTGATGCCATGAAGGATATGGAGTCATGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- tcatccc
- - - - -ccaattc
- - - - - - - - - - - - - - -tcccaag
- - - - - - - - - - - - - - - - - - - - - - - - - - -tcaagta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atacaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcaaaca