Sequence
atgc intronic sequence ATGC exonic sequencegtattaaaacagggggtgtgccgaggcataataggcagagctagttcatgagttgatgatgaaattgaacgcgtgtttcagGTGGAAATGAACGCAGCATGGCAACAGGCGAAACTGAGAGAGTTTTGCAGGGAGAAGGGGATTCATGTGAGTGCATGGTCTCCCCTGGGAGCAAACGGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0077g02150.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA09G30010.1 (Glycine max), 3'ss of exon 2
--------------------gtattaaaacagggggtgtgccgaggcataataggcagagctagttcatgagttgatgatgaaattgaacgcgtgttt--cagGTGGAAATGAACGCAGCATGGCAACAGGCGAAACTGAGAGAGTTTTGCAGGGAGAAGGGGATTCATGTGAGTGCATGGTCTCCCCTGGGAGCAAACGGAG
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actctattctatttcatccacagttaaagaaattaactagtttaagtatgaaattgaggctttaagtatagtgttattccgtaa---aatgcgtcctttgcagGTGGAAATGAACGCAGCATGGCAACAGGAAAATCTGAGAAAATTCTGCAAAGAGAAAGGAATTCACGTGAGTGCATGGAGCCCTCTGGGAGCTAATGGAG
upper sequence: Vv05s0077g02150.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA16G34560.1 (Glycine max), 3'ss of exon 2
gtattaaaa--cagggggtgtgccgaggc--ataat-aggcagagctagttcatgagttgatgatgaaattgaacgcgtgtttcagGTGGAAATGAACGCAGCATGGCAACAGGCGAAACTGAGAGAGTTTTGCAGGGAGAAGGGGATTCATGTGAGTGCATGGTCTCCCCTGGGAGCAAACGGAG
|||| || || || ||| ||| | | |||| | || | | || ||| | |||| |||||||||||| | |||||||||| |||| |||||| | ||| || |||| | |||| || |||||||||||||||||||| || || ||||| || |
gtatgaagttttagcaattgcatgcaggttgatatttacgcagcaatgaaacacttggcggtgttgattccttccattggttttagGTGGAAATGAGCCCAGCATGGCAGCAGGGGAAACTCAAAGAATTCTGCAAGCAGAAAGGAATTCATGTGAGTGCATGGTCACCACTAGGAGCTTACAAAA
upper sequence: Vv05s0077g02150.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA16G34580.1 (Glycine max), 3'ss of exon 2
----------------------------------gtattaaaacagggggtgtgccgaggcataataggcagagctagt--tcatga--gttgatgatgaaattgaacgcgtgtttcagGTGGAAATGAACGCAGCATGGCAACAGGCGAAACTGAGAGAGTTTTGCAGGGAGAAGGGGATTCATGTGAGTGCATGGTCTCCCCTGGGAGCAAACGGAG
|| |||| ||| | | ||| | || || | |||| || || || | || ||| | |||||||||| |||||||||||||| || |||||| | || ||| ||||| || ||||||||||||||||||||
tttacatgtgcatgtatgaaattacaaattcttggtcttaatacaaaattccttagggaatatatatgctgtagatatttgtcattctcattcatccaagAACTTGTTATTGCTTACAGATTGAAATGAACGTAGCATGGCAACAGGGAAATCTGAGAAAATTCTGCCAAGAGAAAGGAATTCATGTGAGTGCATGGTCC-------------------
upper sequence: Vv05s0077g02150.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA16G34570.1 (Glycine max), 3'ss of exon 2
--------------gtattaaaacagggggtgtgccgaggcataataggca-gagctagttcatgagttgatgatgaaattga---acgcgtgtttcagGTGGAAATGAACGCAGCATGGCAACAGGCGAAACTGAGAGAGTTTTGCAGGGAGAAGGGGATTCATGTGAGTGCATGGTCTCCCCTGGGAGCAAACGGAG
|| | || | || || || | | | || || | | |||| |||| | | | |||||||||||||||||| || | ||||| || | |||||| || ||||| |||| | |||| || |||||||| ||||| ||||| | || || || |
gtaccataatttgactactcaagatatatatttggtttatcaagatggtcttggacttcttagtactcatgttatgatgttgaattatggttttttcagGTGGAAATGAACCCATCTTGGCAGCAAGGGAAACTCAGGGAGTTCTGCAAGCAGAAAGGAATTCATGTTAGTGCTTGGTCAGCTCTTGGTGCTTATAAGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cataataggcagagctagttcatgagttgatgatgaaattgaacgcgtgtttcagGTGGAAATGAACGCAGCATGGCAACAGGCGAAACTGAGAGAGTTTTGCAGGGAGAAGGGGATTCATGTGAGTGCATGGTCTCCCCTGGGAGCAAACGGAG
agttgat putative branch site (score: 5)
atgaaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtattaaaacagggggtgtgccgaggcataataggcagagctagttcatgagttgatgatgaaattgaacgcgtgtttcagGTGGAAATGAACGCAGCATGGCAACAGGCGAAACTGAGAGAGTTTTGCAGGGAGAAGGGGATTCATGTGAGTGCATGGTCTCCCCTGGGAGCAAACGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA