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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgcttcattcttttttccttgttttttattgtatctgataacgtaagttcgggaagattctcccatttattgtttagttgggaaggtgtggggtttttgatatagtttttatttaacatttaaagGTTAAAGAATGGCTTCAAAACATAGGAATAGGAGAGCACACAGCAGTCGTGCATGATGATGATGAACCTGATGAGGAAACTGTTCCTTTACATCATGATG

Basic information

species Vitis vinifera
transcript Vv05s0077g01830.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0077g01830.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA15G16270.1 (Glycine max), 3'ss of exon 2
------------gtgtgc-ttcattcttttttccttgttttttattgtatctgataacgtaagttcg--ggaagattctcccatt-tattgtttagttgggaaggtgtggggtttttgatatagtttttatttaa-cat----ttaaagGTTAAAGAATGGCTTCAAAACATAGGAATAGGAGAGCACACAGCAGTCGTGCATGATGATGATGAACCTGATGAGGAAACTGTTCCTTTACATCATGATG
            || |   || ||| ||  ||  |||  || |||   |   |||   ||   ||      |  ||| |    |  |||  |||   |        ||  || ||||||| || | || | | || |||    ||||||||||||||||||||||||||  ||||||| ||||| ||||| ||  | ||||| ||||| ||||||  |||||| |||||||| || || |||  ||| |
gtgagcaatgttgtttatattgatttttggttgattgccttatatatgaatggattttgtgcatttattatattattttttggtgatatcatttctatctagctaagtttggattttgatgtaatgttcactgaaacattatattaaagGTTAAAGAATGGCTTCAAAATCTAGGAATTGGAGAACACACTGCTATGGTGCAAGATGACGATGAAGGTGATGATGAAACTGTCCCGTTGCATACTGAAG

upper sequence: Vv05s0077g01830.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA09G04620.1 (Glycine max), 3'ss of exon 2
------------gtgtgcttcattcttt------tttccttgttttttattgtatctgataacgtaagttcgggaagattctcccatt-tattgtttagttgggaaggtgtggggtttttgatatagtttttatttaa-catt----taaagGTTAAAGAATGGCTTCAAAACATAGGAATAGGAGAGCACACAGCAGTCGTGCATGATGATGATGAACCTGATGAGGAAACTGTTCCTTTACATCATGATG
            || | | |   | ||       || |||| | | | | || || |  |  || |  |   | |  ||| |    |  |||  |||   |        ||  || ||||||| || | || | | || ||||    |||||||||||||||||||||||||  ||||||| ||||| ||||| ||  | | ||| ||||| || |||  |||||| || ||||| || || |||  ||| |
gtgagcaatgttgtttacattgattttcggttgattgccttatatatgaatggattttgtg-cgcatttattgtattattttttggtgatatcatttctatctagctaagtttggattttgatgtaatgttcactgaaacattatattaaagGTTAAAGAATGGCTTCAAAATCTAGGAATTGGAGAACACACTGCTATGGCGCAAGATGACGACGAAGGTGATGATGAGACTGTCCCGTTGCATACTGAAG

upper sequence: Vv05s0077g01830.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT3G16785.1 (Arabidopsis thaliana), 3'ss of exon 2
--gtgtgcttcattcttttttccttgttttttattgtatctgataacg-taagttcgggaagattctcccatttattgtttagttgggaaggtgtggggtttttgatatagtttttattt-aacat----ttaaagGTTAAAGAATGGCTTCAAAACATAGGAATAGGAGAGCACACAGCAGTCGTGCATGATGATGATGAACCTGATGAGGAAACTGTTCCTTTACATCATGATG---------
   |||| |   ||  | | ||   |  |||| || ||   | |   | |    |  |   || | |   |    || |||  ||||   | ||    |  |||||| | |||||  ||  || ||    ||||||||||||||||||||||||||  |||||||||| || ||  || | || ||||| ||||| ||||   ||||||| |      ||||  ||||||| ||||         
gtttgtggtgacttgatatatcaaggaattttcttctactagtttgtgattccctttgagtgaatattttaaaggtt-tttccttggtctgttgaattgagtttgatgtggttttctttcgaatatcacattaaagGTTAAAGAATGGCTTCAAAATCTAGGAATAGGGGATCATCCACCCGTTGTGCAAGATGAAGATG---CTGATGAAG------TTCCGCTACATCAAGATGAAAGTGCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttagttgggaaggtgtggggtttttgatatagtttttatttaacatttaaagGTTAAAGAATGGCTTCAAAACATAGGAATAGGAGAGCACACAGCAGTCGTGCATGATGATGATGAACCTGATGAGGAAACTGTTCCTTTACATCATGATG
                                        atttaac  putative branch site (score: 3)
                       tttttgatatagtttt  TA-rich tract