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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatcaaatcccgatcttggtccccttattcatttaattattttcttaattatgaagcaaaaggaaaaaaaaaagtgtggaagtaactaaacattttcttaattttcagGAGCTACTATCGTTGCACCACTGCCGCCTGCGGAGTGAAAAAGAGGGTGGAGCGATCCTCCGATGATCCCACCACTGTTGTTACTACCTATGAAGGTCAG

Basic information

species Vitis vinifera
transcript Vv05s0077g00730.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27583690|gb|CB006385.1|CB006385
EST:     AGATGGAGGAAGTACGGCCAAAAAGCTGTGAAGAACAGCCCTTTTCCTAG                         GAGCTACTATCGTTGCACCACTGCCGCCTGCGGAGTGAAAAAGAGGGTGGA
genomic: AGATGGAGGAAGTACGGCCAAAAAGCTGTGAAGAACAGCCCTTTTCCTAGgtatatcaaa ... taattttcagGAGCTACTATCGTTGCACCACTGCCGCCTGCGGAGTGAAAAAGAGGGTGGA
EST: gi|110395866|gb|EC961540.1|EC961540
EST:     AGATGGAGGAAGTACGGCCAAAAAGCTGTGAAGAACAGCCCTTTTCCTAG                         GAGCTACTATCGTTGCACCACTGCCGCCTGCGGAGTGAAAAAGAGGGTGGA
genomic: AGATGGAGGAAGTACGGCCAAAAAGCTGTGAAGAACAGCCCTTTTCCTAGgtatatcaaa ... taattttcagGAGCTACTATCGTTGCACCACTGCCGCCTGCGGAGTGAAAAAGAGGGTGGA
EST: gi|22009147|gb|BQ794181.1|BQ794181
EST:     AGATGGAGGAAGTACGGCCAAAAAGCTGTGAAGAACAGCCCTTTTCCTAG                         GAGCTACTATCGTTGCACCACTGCCGCCTGCGGAGTGAAAAAGAGGGTGGA
genomic: AGATGGAGGAAGTACGGCCAAAAAGCTGTGAAGAACAGCCCTTTTCCTAGgtatatcaaa ... taattttcagGAGCTACTATCGTTGCACCACTGCCGCCTGCGGAGTGAAAAAGAGGGTGGA
EST: gi|156737123|gb|EV241244.1|EV241244
EST:     AGATGGAGGAAGTACGGCCAAAAAGCTGTGAAGAACAGCCCTTTTCCTAG                         GAGCTACTATCGTTGCACCACTGCCGCCTGCGGAGTGAAAAAGAGGGTGGA
genomic: AGATGGAGGAAGTACGGCCAAAAAGCTGTGAAGAACAGCCCTTTTCCTAGgtatatcaaa ... taattttcagGAGCTACTATCGTTGCACCACTGCCGCCTGCGGAGTGAAAAAGAGGGTGGA
EST: gi|110719220|gb|EE096949.1|EE096949
EST:     AGATGGAGGAAGTACGGCCAAAAAGCTGTGAAGAACAGCCCTTTTCCTAG                         GAGCTACTATCGTTGCACCACTGCCGCCTGCGGAGTGAAAAAGAGGGTGGA
genomic: AGATGGAGGAAGTACGGCCAAAAAGCTGTGAAGAACAGCCCTTTTCCTAGgtatatcaaa ... taattttcagGAGCTACTATCGTTGCACCACTGCCGCCTGCGGAGTGAAAAAGAGGGTGGA
EST: gi|110372689|gb|EC936875.1|EC936875
EST:     AGATGGAGGAAGTACGGCCAAAAAGCTGTGAAGAACAGCCCTTTTCCTAG                         GAGCTACTATCGTTGCACCACTGCCGCCTGCGGAGTGAAAAAGAGGGTGGA
genomic: AGATGGAGGAAGTACGGCCAAAAAGCTGTGAAGAACAGCCCTTTTCCTAGgtatatcaaa ... taattttcagGAGCTACTATCGTTGCACCACTGCCGCCTGCGGAGTGAAAAAGAGGGTGGA
EST: gi|46917930|gb|CN547259.1|CN547259
EST:     AGATGGAGGAAGTACGGCCAAAAAGCTGTGAAGAACAGCCCTTTTCCTAG                         GAGCTACTATCGTTGCACCACTGCCGCCTGCGGAGTGAAAAAGAGGGTGGA
genomic: AGATGGAGGAAGTACGGCCAAAAAGCTGTGAAGAACAGCCCTTTTCCTAGgtatatcaaa ... taattttcagGAGCTACTATCGTTGCACCACTGCCGCCTGCGGAGTGAAAAAGAGGGTGGA
EST: gi|22014586|gb|BQ799620.1|BQ799620
EST:     AGATGGAGGAAGTACGGCCAAAAAGCTGTGAAGAACAGCCCTTTTCCTAG                         GAGCTACTATCGTTGCACCACTGCCGCCTGCGGAGTGAAAAAGAGGGTGGA
genomic: AGATGGAGGAAGTACGGCCAAAAAGCTGTGAAGAACAGCCCTTTTCCTAGgtatatcaaa ... taattttcagGAGCTACTATCGTTGCACCACTGCCGCCTGCGGAGTGAAAAAGAGGGTGGA
EST: gi|22014202|gb|BQ799236.1|BQ799236
EST:     AGATGGAGGAAGTACGGCCAAAAAGCTGTGAAGAACAGCCCTTTTCCTAG                         GAGCTACTATCGTTGCACCACTGCCGCCTGCGGAGTGAAAAAGAGGGTGGA
genomic: AGATGGAGGAAGTACGGCCAAAAAGCTGTGAAGAACAGCCCTTTTCCTAGgtatatcaaa ... taattttcagGAGCTACTATCGTTGCACCACTGCCGCCTGCGGAGTGAAAAAGAGGGTGGA
EST: gi|27582871|gb|CB005566.1|CB005566
EST:     AGATGGAGGAAGTACGGCCAAAAAGCTGTGAAGAACAGCCCTTTTCCTAG                         GAGCTACTATCGTTGCACCACTGCCGCCTGCGGAGTGAAAAAGAGGGTGGA
genomic: AGATGGAGGAAGTACGGCCAAAAAGCTGTGAAGAACAGCCCTTTTCCTAGgtatatcaaa ... taattttcagGAGCTACTATCGTTGCACCACTGCCGCCTGCGGAGTGAAAAAGAGGGTGGA
EST: gi|110712223|gb|EE089600.1|EE089600
EST:     AGATGGAGGAAGTACGGCCAAAAAGCTGTGAAGAACAGCCCTTTTCCTAG                         GAGCTACTATCGTTGCACCACTGCCGCCTGCGGAGTGAAAAAGAGGGTGGA
genomic: AGATGGAGGAAGTACGGCCAAAAAGCTGTGAAGAACAGCCCTTTTCCTAGgtatatcaaa ... taattttcagGAGCTACTATCGTTGCACCACTGCCGCCTGCGGAGTGAAAAAGAGGGTGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagcaaaaggaaaaaaaaaagtgtggaagtaactaaacattttcttaattttcagGAGCTACTATCGTTGCACCACTGCCGCCTGCGGAGTGAAAAAGAGGGTGGAGCGATCCTCCGATGATCCCACCACTGTTGTTACTACCTATGAAGGTCAG
                                       ttttcttaattttc  CT-rich tract
                             taactaaacattttct  TA-rich tract