1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ggacatttgcggatcttgtgtaacttattgtgcttgtgatcttttattttgttcatccaacattttttttgaagaatgatttttatgcctcttattttagGTGATGGAAAAGGCTGGTTTTTCTGATGATGGCTTCTCCGGGGTTCCAGTTTTCCAG
species | Vitis vinifera |
transcript | Vv05s0062g00220.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTGCATTTAGGTTGATGCCGGACTCAACCCAAGTCAAGAATGCACTTAGA GTGATGGAAAAGGCTGGTTTTTCTGATGATGGCTTCTCCGGGGTTCCAGTTEST: gi|37186286|gb|CF605639.1|CF605639
genomic: TTGCATTTAGGTTGATGCCGGACTCAACCCAAGTCAAGAATGCACTTAGAgtgagtaatt ... cttattttagGTGATGGAAAAGGCTGGTTTTTCTGATGATGGCTTCTCCGGGGTTCCAGTT
EST: TTGCATTTAGGTTGATGCCGGACTCAACCCAAGTCAAGAATGCACTTAGA GTGATGGAAAAGGCTGGTTTTTCTGATGATGGCTTCTCCGGGGTTCCAGTTEST: gi|349822773|gb|FQ398160.1|FQ398160
genomic: TTGCATTTAGGTTGATGCCGGACTCAACCCAAGTCAAGAATGCACTTAGAgtgagtaatt ... cttattttagGTGATGGAAAAGGCTGGTTTTTCTGATGATGGCTTCTCCGGGGTTCCAGTT
EST: TTGCATTTAGGTTGATGCCGGACTCAACCCAAGTCAAGAATGCACTTAGA GTGATGGAAAAGGCTGGTTTTTCTGATTATGGCTTCTCCGGGGTTCCAGTTEST: gi|349816841|gb|FQ399709.1|FQ399709
genomic: TTGCATTTAGGTTGATGCCGGACTCAACCCAAGTCAAGAATGCACTTAGAgtgagtaatt ... cttattttagGTGATGGAAAAGGCTGGTTTTTCTGATGATGGCTTCTCCGGGGTTCCAGTT
EST: TTGCATTTAGGTTGATGCCGGACTCAACCCAAGTCAAGAATGCACTTAGA GTGATGGAAAAGGCTGGTTTTTCTGATTATGGCTTCTCCGGGGTTCCAGTTEST: gi|110412506|gb|EC978256.1|EC978256
genomic: TTGCATTTAGGTTGATGCCGGACTCAACCCAAGTCAAGAATGCACTTAGAgtgagtaatt ... cttattttagGTGATGGAAAAGGCTGGTTTTTCTGATGATGGCTTCTCCGGGGTTCCAGTT
EST: TTGCATTTAGGTTGATGCCGGACTCAACCCAAGTCAAGAATGCACTTAGA GTGATGGAAAAGGCTGGTTTTTCTGATGATGGCTTCTCCGGGGTTCCAGTTEST: gi|349819759|gb|FQ402696.1|FQ402696
genomic: TTGCATTTAGGTTGATGCCGGACTCAACCCAAGTCAAGAATGCACTTAGAgtgagtaatt ... cttattttagGTGATGGAAAAGGCTGGTTTTTCTGATGATGGCTTCTCCGGGGTTCCAGTT
EST: TTGCATTTAGGTTGATGCCGGACTCAACCCAAGTCAAGAATGCACTTAGA GTGATGGAAAAGGCTGGTTTTTCTGATTATGGCTTCTCCGGGGTTCCAGTTEST: gi|110708560|gb|EE086241.1|EE086241
genomic: TTGCATTTAGGTTGATGCCGGACTCAACCCAAGTCAAGAATGCACTTAGAgtgagtaatt ... cttattttagGTGATGGAAAAGGCTGGTTTTTCTGATGATGGCTTCTCCGGGGTTCCAGTT
EST: TTGCATTTAGGTTGATGCCGGACTCAACCCAAGTCAAGAATGCACTTANA GTGATGGAAAAGGCTGGTTTTTCTGATGATGGCTTCTCCGGGGTTCCAGTTEST: gi|110417406|gb|EC983458.1|EC983458
genomic: TTGCATTTAGGTTGATGCCGGACTCAACCCAAGTCAAGAATGCACTTAGAgtgagtaatt ... cttattttagGTGATGGAAAAGGCTGGTTTTTCTGATGATGGCTTCTCCGGGGTTCCAGTT
EST: TTGCATTTAGGTTGATGCCGGACTCAACCCAAGTCAAGAATGCACTTAGA GTGATGGAAAAGGCTGGTTTTTCTGATGATGGCTTCTCCGGGGTTCCAGTTEST: gi|77581122|gb|DV219487.1|DV219487
genomic: TTGCATTTAGGTTGATGCCGGACTCAACCCAAGTCAAGAATGCACTTAGAgtgagtaatt ... cttattttagGTGATGGAAAAGGCTGGTTTTTCTGATGATGGCTTCTCCGGGGTTCCAGTT
EST: TTGCATTTAGGTTGATGCCGGACTCAACCCAAGTCAAGAATGCACTTAGA GTGATGGAAAAGGCTGGTTTTTCTGATGATGGCTTCTCCGGGGTTCCAGTTEST: gi|349830095|gb|FQ420355.1|FQ420355
genomic: TTGCATTTAGGTTGATGCCGGACTCAACCCAAGTCAAGAATGCACTTAGAgtgagtaatt ... cttattttagGTGATGGAAAAGGCTGGTTTTTCTGATGATGGCTTCTCCGGGGTTCCAGTT
EST: TTGCATTTAGGTTGATGCCGGACTCAACCCAAGTCAAGAATGCACTTAGA GTGATGGAAAAGGCTGGTTTTTCTGATTATGGCTTCTCCGGGGTTCCAGTTEST: gi|110687203|gb|EE064406.1|EE064406
genomic: TTGCATTTAGGTTGATGCCGGACTCAACCCAAGTCAAGAATGCACTTAGAgtgagtaatt ... cttattttagGTGATGGAAAAGGCTGGTTTTTCTGATGATGGCTTCTCCGGGGTTCCAGTT
EST: TTGCATTTAGGTTGATGCCGGACTCAACCCAAGTCAAGAATGCACTTAGA GTGATGGAAAAGGCTGGTTTTTCTGATGATGGCTTCTCCGGGGTTCCAGTTEST: gi|352764381|gb|FQ471348.1|FQ471348
genomic: TTGCATTTAGGTTGATGCCGGACTCAACCCAAGTCAAGAATGCACTTAGAgtgagtaatt ... cttattttagGTGATGGAAAAGGCTGGTTTTTCTGATGATGGCTTCTCCGGGGTTCCAGTT
EST: TTGCATTTAGGTTGATGCCGGACTCAACCCAAGTCAAGAATGCACTTAGA GTGATGGAAAAGGCTGGTTTTTCTGATGATGGCTTCTCCGGGGTTCCAGTTEST: gi|352787186|gb|FQ477806.1|FQ477806
genomic: TTGCATTTAGGTTGATGCCGGACTCAACCCAAGTCAAGAATGCACTTAGAgtgagtaatt ... cttattttagGTGATGGAAAAGGCTGGTTTTTCTGATGATGGCTTCTCCGGGGTTCCAGTT
EST: TTGCGTTTAGGTTGATGCCGGACTCAACCCAAGTCAAGAATGCACTTAGA GCGATGGAAAAGGCTGGTTTTTCTGATGATGGCTTCTCCGGGGTTCCAGTTEST: gi|161718396|gb|FC064783.1|FC064783
genomic: TTGCATTTAGGTTGATGCCGGACTCAACCCAAGTCAAGAATGCACTTAGAgtgagtaatt ... cttattttagGTGATGGAAAAGGCTGGTTTTTCTGATGATGGCTTCTCCGGGGTTCCAGTT
EST: TTGCATTTAGGTTGATGCCGGACTCAACCCAAGTCAAGAATGCACTTAGA GTGATGGAAAAGGCTGGTTTTTCTGATGATGGCTTCTCCGGGGTTCCAGTT
genomic: TTGCATTTAGGTTGATGCCGGACTCAACCCAAGTCAAGAATGCACTTAGAgtgagtaatt ... cttattttagGTGATGGAAAAGGCTGGTTTTTCTGATGATGGCTTCTCCGGGGTTCCAGTT
attttgttcatccaacattttttttgaagaatgatttttatgcctcttattttagGTGATGGAAAAGGCTGGTTTTTCTGATGATGGCTTCTCCGGGGTTCCAGTTTTCCAG
tttttatgcctctt CT-rich tract
aacattttttttgaag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggacatttgcggatcttgtgtaacttattgtgcttgtgatcttttattttgttcatccaacattttttttgaagaatgatttttatgcctcttattttagGTGATGGAAAAGGCTGGTTTTTCTGATGATGGCTTCTCCGGGGTTCCAGTTTTCCAG
- -catttgc
- - - - - - - - - - - - - - - -gcttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tccaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgcct