Sequence
atgc intronic sequence ATGC exonic sequence...aattttttgcattttgtttgtggttctatcttcttgaaattccgtttcttgacttacaagatgttagaccttacgctctcaagccatgttgcccctgcagCTACTTGATCGCATCAATGGGTTTGCAAGTCATTTGGAGCTTTGGGCTTGCTTTCTTGGATGCATATGCCTTGGTGAAAAAGAAGGTCCTCCACAATCCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0049g00440.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA10G33140.1 (Glycine max), 3'ss of exon 1
aattttttgcattttgtttgtggttctatcttcttgaaattccgtttcttgacttacaagatgttagaccttacgctctcaagccat--gttgcccctgcagCTACTTGATCGCATCAATGGGTTTGCAAGTCATTTGGAGCTTTGGGCTTGCTTTCTTGGATGCATATGCCTTGGTGAAAAAGAAGGTCCTCCACAATCCT
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--gatatgatgatctgcaaatgtacttgttttgttcaccactagcttccttggatgttgaatgtggaataacttgctgctgactcctccttttatattacagTTACTTGATAGCTTCAATGGGTTTACAAGTCATTTGGAGTTTTGTGCTTGCTTTATTGGATGCATATGCCTTGGTGAAAAAAAAGGTCCTCCACAACGCC
upper sequence: Vv05s0049g00440.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA20G34500.1 (Glycine max), 3'ss of exon 1
aattttttgcattttgtttgtggttctatcttcttgaaattccgtttcttgacttacaagatgttagaccttacgctctcaagccatgttgcccctgcagCTACTTGATCGCATCAATGGGTTTGCAAGTCATTTGGAGCTTTGGGCTTGCTTTCTTGGATGCATATGCCTTGGTGAAAAAGAAGGTCCTCCACAATCCT
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gatatgatgatctgcaaatgtacttgtgttgttcatcactagcttggttggatgctgaatgtggaataacttgctactgagtgctccttttgtattacagTTACTTGATAGCTTCAATGGGTTTACTAGTCATTTGGAGTTTTGTGCTTGCTTTATTGGATGCATATGCCTTGGTGAAAAAAAAGGTCCTCCACAACGCT
upper sequence: Vv05s0049g00440.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA10G01020.1 (Glycine max), 3'ss of exon 1
--aattttttgcattttgtttgt-ggttctatcttcttgaaattccgtttcttgacttacaagatgttagaccttacgctctcaagccatgttgcccctgcagCTACTTGATCGCATCAATGGGTTTGCAAGTCATTTGGAGCTTTGGGCTTGCTTTCTTGGATGCATATGCCTTGGTGAAAAAGAAGGTCCTCCACAATCCT
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aaaatgagtcttacattgttcatcaatacttcaatagcaatgcgtggatactaaatgtggaataacttagatactgactgttccac---tggtaattatgcagTTACTTGATAGCTTCAATGGGTTTACAAATCATTTGGAGTTTTGTGCTTGCTTTAATGGATTTGTATGCTTTGGTGAGAAAGAAGGTCCTCCTCAACCCGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|46911313|gb|CN546688.1|CN546688EST: ATTGCTTCCATGGCAACTACTTCCAGCTTCTTCAGTGTCACAGCTTTTTG CTACTTGATCGCATCAATGGGTTTGCAAGTCATTTGGAGCTTTGGGCTTGC
genomic: ATTGCTTCCATGGCAACTACTTCCAGCTTCTTCAGTGTCACAGCTTTTTGgtatttgttc ... gcccctgcagCTACTTGATCGCATCAATGGGTTTGCAAGTCATTTGGAGCTTTGGGCTTGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcttgacttacaagatgttagaccttacgctctcaagccatgttgcccctgcagCTACTTGATCGCATCAATGGGTTTGCAAGTCATTTGGAGCTTTGGGCTTGCTTTCTTGGATGCATATGCCTTGGTGAAAAAGAAGGTCCTCCACAATCCT
ttgcccct CT-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aattttttgcattttgtttgtggttctatcttcttgaaattccgtttcttgacttacaagatgttagaccttacgctctcaagccatgttgcccctgcagCTACTTGATCGCATCAATGGGTTTGCAAGTCATTTGGAGCTTTGGGCTTGCTTTCTTGGATGCATATGCCTTGGTGAAAAAGAAGGTCCTCCACAATCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - ttttgca
- - - - - - - - -ttgtggt
- - - - - - - - - - - - - - -cttcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcaagc