Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacttttctgtattatgagagagttttaatcaaagaaaatattgcattcttcatatttgttgcattgcatttctgttacttgcagaaagggtaacactcgtgcaacccaaagttagacacatattatatcattataagttgatgtttaaaactgacttcgtttattgctgtactctccagCTTATCACCAACGACAGATTTAAGAGTGTAGAACACAGAGTACTGGCAAACCGACGAGGTCCAAGAGTCTCAGTGGCATGCTTTTTTAGCACATCTCATC

Basic information

species Vitis vinifera
transcript Vv05s0049g00310.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110383992|gb|EC948402.1|EC948402
EST:     TTCCCCCAGAGCCTGGAGCCCTTGTAATTAATGTTGGTGATCTTCTACAG                         CTTATCACCAACGACAGATTTAAGAGTGTAGAACACAGAGTACTGGCAAAC
genomic: TTCCCCCAGAGCCTGGAGCCCTTGTAATTAATGTTGGTGATCTTCTACAGgtaaactttt ... tactctccagCTTATCACCAACGACAGATTTAAGAGTGTAGAACACAGAGTACTGGCAAAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatcattataagttgatgtttaaaactgacttcgtttattgctgtactctccagCTTATCACCAACGACAGATTTAAGAGTGTAGAACACAGAGTACTGGCAAACCGACGAGGTCCAAGAGTCTCAGTGGCATGCTTTTTTAGCACATCTCATC
                        aactgac  putative branch site (score: 2)
                                             tactctcc  putative PPT
     attataagttgatgtt  TA-rich tract