1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gtttggtaactaattttacctgacagaaaggtattaatattttgtaatttttttcctcatccctgattgctttagagttttatcttcttttttttttcagGTCTGGTCGTATATATGCTATCGACACACAAAAAAATCCTAGGGGTCCCAGTTTGCATAAAGTTGTTGAGCCTGAAGACATTCTGAAGAAGACTGGGTTA
species | Vitis vinifera |
transcript | Vv05s0029g00240.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CATGGTGATTCATCACAAGAACGGCGTTTTCTTGTCCTACCTTCCTTGGT GTCTGGTCGTATATATGCTATCGACACEST: gi|27755122|gb|CB035877.1|CB035877
genomic: CATGGTGATTCATCACAAGAACGGCGTTTTCTTGTCCTACCTTCCTTGGTgtaagaactg ... tttttttcagGTCTGGTCGTATATATGCTATCGACAC
EST: CATGGTGATTCATCACAAGAACGGCGTTTTCTTGTCCTACCTTCCTTGGT GTCTGGTCGTATATATGCTATCGACACACNNNNNNNTCCTAGGGGTCCCAGEST: gi|161716242|gb|FC066505.1|FC066505
genomic: CATGGTGATTCATCACAAGAACGGCGTTTTCTTGTCCTACCTTCCTTGGTgtaagaactg ... tttttttcagGTCTGGTCGTATATATGCTATCGACACACAAAAAAATCCTAGGGGTCCCAG
EST: CATGGTGATTCATCACAAGAACGGCGTTTTCTTGTCCTACCTTCCTTGGT GTCTGGTCGTATATATGCTATCGACACACNNNNNNNTCCTAGGGGTCCCAGEST: gi|161721033|gb|FC069642.1|FC069642
genomic: CATGGTGATTCATCACAAGAACGGCGTTTTCTTGTCCTACCTTCCTTGGTgtaagaactg ... tttttttcagGTCTGGTCGTATATATGCTATCGACACACAAAAAAATCCTAGGGGTCCCAG
EST: CATGGTGATTCATCACAAGAACGGCGTTTTCTTGTCCTACCTTCCTTGGT GTCTGGTCGTATATATGCTATCGACACACNNNNNNNTCCTAGGGGTCCCAGEST: gi|161719235|gb|FC069374.1|FC069374
genomic: CATGGTGATTCATCACAAGAACGGCGTTTTCTTGTCCTACCTTCCTTGGTgtaagaactg ... tttttttcagGTCTGGTCGTATATATGCTATCGACACACAAAAAAATCCTAGGGGTCCCAG
EST: CATGGTGATTCATCACAAGAACGGCGTTTTCTTGTCCTACCTTCCTTGGT GTCTGGTCGTATATATGCTATCGACACACNNNNNNNTCCTAGGGGTCCCAG
genomic: CATGGTGATTCATCACAAGAACGGCGTTTTCTTGTCCTACCTTCCTTGGTgtaagaactg ... tttttttcagGTCTGGTCGTATATATGCTATCGACACACAAAAAAATCCTAGGGGTCCCAG
aatttttttcctcatccctgattgctttagagttttatcttcttttttttttcagGTCTGGTCGTATATATGCTATCGACACACAAAAAAATCCTAGGGGTCCCAGTTTGCATAAAGTTGTTGAGCCTGAAGACATTCTGAAGAAGACTGGGTTA
ccctgat putative branch site (score: 4)
ttttatcttctttttt putative PPT
tttagagttttatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttggtaactaattttacctgacagaaaggtattaatattttgtaatttttttcctcatccctgattgctttagagttttatcttcttttttttttcagGTCTGGTCGTATATATGCTATCGACACACAAAAAAATCCTAGGGGTCCCAGTTTGCATAAAGTTGTTGAGCCTGAAGACATTCTGAAGAAGACTGGGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - -aactaat
- - - - - - - - - cctgaca
- - - - - - - - - - - - - aaaggta