Sequence
atgc intronic sequence ATGC exonic sequence...atcgaatattctccttttttggaaacaaatatttatcagtgtctcatttttttattttttttatctttcgtaaatacttccatccaatatatttgagcagGTATTGTGGGCATTTTCCTTATACTTGGAAGCTGTTGCCATACTTCCTCAACTGGTTTTATTGCAAAGGACTAGAAATATTGACAACTTGACAGGACAAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0029g00180.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA18G35390.1 (Glycine max), 3'ss of exon 2
------------------------------------------atcgaatattctccttttttggaaac-----aaatatttatcagtgtctcatttttttattttt-tttatctttcgtaaatacttccatccaatatatttgagcagGTATTGTGGGCATTTTCCTTATACTTGGAAGCTGTTGCCATACTTCCTCAACTGGTTTTATTGCAAAGGACTAGAAATATTGACAACTTGACAGGACAAT-
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ttagtgtgcatctgctgttatgtgttttctccagactgtagtaactgttgtgctactatttacatgtccctttgactattttcaagagt-tgattgtgtaacttttgctcactttctgaaaatacacttataca------ttggttaggTGATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAACTAGTACTTTTACAGAGAACTAGAAATATTGACAATTTGACTGGACAATA
upper sequence: Vv05s0029g00180.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G46570.1 (Glycine max), 3'ss of exon 2
----------------------atcgaatattctccttttttggaaacaaatatttat----------cagtgtctcatttttttattttt-tttatctttcgtaaatacttccatccaatatatttgagcagGTATTGTGGGCATTTTCCTTATACTTGGAAGCTGTTGCCATACTTCCTCAACTGGTTTTATTGCAAAGGACTAGAAATATTGACAACTTGACAGGACAAT
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gttagtaagttatacattgtctatagtaattattgtgctactagaaacatgtcctttttgactgctttcaagagctgattgtgtaacttttgcatactttttgaaaatacacttatgca------ttgaatagGTCATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAACTAGTACTTTTACAGAGAACTAGAAATATTGACAATTTGACTGGACAGT
upper sequence: Vv05s0029g00180.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT3G25040.1 (Arabidopsis thaliana), 3'ss of exon 2
---------atcgaatattctccttttttggaaacaaatatttatcagtgtctcatttttttattttttttatctttcgtaaatacttccatccaatatatttgagcagGTATTGTGGGCATTTTCCTTATACTTGGAAGCTGTTGCCATACTTCCTCAACTGGTTTTATTGCAAAGGACTAGAAATATTGACAACTTGACAGGACAAT
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gtttgtcttctcaaaaagattgcaatttgttttccatggagcctgaactcttttgtttgacaagctgatttatttttgtgcaattggtgtatgctttatgat--gtcagGTATTGTGGACGTCTTCATTGTACTTGGAGGCTGTTGCCATATTACCTCAGCTTGTCTTGTTGCAAAGGACTAGAAATATTGACAACTTGACCGGACAATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110382943|gb|EC947276.1|EC947276EST: CTTGCCTACTTTTAGCCCTAGTTATGAATGAGAAGTTCACTTTCCTAGAG GTATTGTGGGCATTTTCCTTATACTTGGAAGCTGTTGCCATACTTCCTCAA
genomic: CTTGCCTACTTTTAGCCCTAGTTATGAATGAGAAGTTCACTTTCCTAGAGgtatgcgttt ... atttgagcagGTATTGTGGGCATTTTCCTTATACTTGGAAGCTGTTGCCATACTTCCTCAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atttttttattttttttatctttcgtaaatacttccatccaatatatttgagcagGTATTGTGGGCATTTTCCTTATACTTGGAAGCTGTTGCCATACTTCCTCAACTGGTTTTATTGCAAAGGACTAGAAATATTGACAACTTGACAGGACAAT
tttattttttttatct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atcgaatattctccttttttggaaacaaatatttatcagtgtctcatttttttattttttttatctttcgtaaatacttccatccaatatatttgagcagGTATTGTGGGCATTTTCCTTATACTTGGAAGCTGTTGCCATACTTCCTCAACTGGTTTTATTGCAAAGGACTAGAAATATTGACAACTTGACAGGACAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatcca