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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgagaaattcattttcttttgttcttttgaatttatttatttgttattgaacttttcataataaacttttatatcatgttggcatcatgtcatcacagATTGACTCCTTAGACACACTAGCTTTATTGGGTGACCGAGAGCGGTTTGCTACCTCAGTTGAATGGATTGGTAAAAACCTTCGGTTTGATATT

Basic information

species Vitis vinifera
transcript Vv05s0020g04650.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g04650.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA10G32320.1 (Glycine max), 3'ss of exon 1
gtatgagaaattcattttcttttgttcttttgaatttatttatttgttattgaacttttcataataaacttttatatcatgttggcatcatgtcatcacagATTGACTCCTTAGACACACTAGCTTTATTGGGTGACCGAGAGCGGTTTGCTACCTCAGTTGAATGGATTGGTAAAAACCTTCGGTTTGATATT
                       |||| | |     |    || |   ||  ||  |   || ||   | ||   ||     ||   |||| || |  ||||||||||| ||||||||  | |||||| | ||||||||  | || ||  || | || |||||||||||||||||||| ||||| |||||||| 
-----------------------gttcgtattcccatcccaatctcaaatcaaa--tcaaatcattttcattctaattccaatgcattcat-tcctatcagATTGACTCTTTAGACACTTTGGCTTTACTTGGTGACCGCCAACGATTCTCTGCTTCCGTTGAATGGATTGGTAAAAATCTTCGCTTTGATATA

upper sequence: Vv05s0020g04650.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT5G43710.1 (Arabidopsis thaliana), 3'ss of exon 2
gtatgagaaattcattttcttttgttcttttgaatttatttatttgttattgaacttttcataataaacttttatatcatgttggcatcatgtcatcacagATTGACTCCTTAGACACACTAGCTTTATTGGGTGACCGAGAGCGGTTTGCTACCTCAGTTGAATGGATTGGTAAAAACCTTCGGTTTGATATT
    |  |  || | | | |    |||| |||  |     | | | ||||  ||   || | |||    ||         | ||||||  |||      |||||||||| || || ||| |||||||| | |||||||||||||| ||  || | || |||||||||||||||||||| |||| |||| |||| 
----gtaagctttaatatataaccttctcttgtgtaaggctttgtcttatgtaaaacttgacaatggtttt---------ggtggcatt-tgt----gtagATTGACTCGTTGGATACATTAGCTTTACTTGGTGACCGAGAGCGCTTCACTTCTTCTGTTGAATGGATTGGTAAAAATCTTCAGTTTAATATA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattgaacttttcataataaacttttatatcatgttggcatcatgtcatcacagATTGACTCCTTAGACACACTAGCTTTATTGGGTGACCGAGAGCGGTTTGCTACCTCAGTTGAATGGATTGGTAAAAACCTTCGGTTTGATATT
      aacttttcataataaa  TA-rich tract