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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtaaaccttttggccagtaattttgctatccaatttcaagtatccctcttgttgctctcagattgttatgatcaccttctttgaaggcagcttacatcaggtgtaactttacccacatgtaatgcagGATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCATCTTGTTCTTTCTGATGATGAAGAGACTGTGAAGAAGGGCTGTGGGATAT

Basic information

species Vitis vinifera
transcript Vv05s0020g04160.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g04160.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT3G22850.1 (Arabidopsis thaliana), 3'ss of exon 2
gtgagtaaaccttttggccagtaattttgctatccaatttcaagtatccctcttgttgctctcagattgttatgatcaccttctttgaaggcagcttacatcaggtgtaactttacccacatgtaatgcagGATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCATCTTGTTCTTTCTGATGATGAAGAGACTGTGAAGAAGGGCTGTGGGATAT
                                         |||| |   |  || | || |   | | || |||      | | || |    |  ||   | |  || | | |    | | |   | |||||||  |||| |||||||||  ||| |||||||   ||| ||||||| ||||||||| ||||||||||||  |||||||| |||||||| ||||| | ||
---------------------------------------gtaagtttgaattctgcttcttt---actatt-tgacacttatttctgcatattg--taatgctgaggttattattattatacgcgtttcagGATGTAGATGGGAGTGTTCCTCTCTACTGGGGAACCGATGCTGAAGGACATCTTGTTGTTTCTGATGATGTTGAGACTGTCAAGAAGGGTTGTGGTAAAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30128667|gb|CB914006.1|CB914006
EST:     TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCT                         GATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
genomic: TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCTgtgagtaaac ... tgtaatgcagGATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
EST: gi|161714833|gb|FC063281.1|FC063281
EST:     TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCT                         GATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
genomic: TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCTgtgagtaaac ... tgtaatgcagGATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
EST: gi|110703796|gb|EE080954.1|EE080954
EST:     TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCT                         GATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
genomic: TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCTgtgagtaaac ... tgtaatgcagGATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
EST: gi|110398107|gb|EC964229.1|EC964229
EST:     TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCT                         GATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
genomic: TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCTgtgagtaaac ... tgtaatgcagGATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
EST: gi|34320344|gb|CF373098.1|CF373098
EST:     TTGCATTTGTTCTCTATGACAGCTCTANCAGAACT-CATTTCTAGCTGCT                         GATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
genomic: TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCTgtgagtaaac ... tgtaatgcagGATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
EST: gi|110400967|gb|EC967556.1|EC967556
EST:     TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCT                         GATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
genomic: TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCTgtgagtaaac ... tgtaatgcagGATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
EST: gi|110395495|gb|EC961161.1|EC961161
EST:     TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCT                         GATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
genomic: TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCTgtgagtaaac ... tgtaatgcagGATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
EST: gi|110413953|gb|EC979772.1|EC979772
EST:     TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCT                         GATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
genomic: TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCTgtgagtaaac ... tgtaatgcagGATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
EST: gi|110386775|gb|EC951398.1|EC951398
EST:     TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCT                         GATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
genomic: TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCTgtgagtaaac ... tgtaatgcagGATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
EST: gi|110392675|gb|EC956897.1|EC956897
EST:     TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCT                         GATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
genomic: TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCTgtgagtaaac ... tgtaatgcagGATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
EST: gi|30304294|gb|CB981088.1|CB981088
EST:     TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCT                         GATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
genomic: TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCTgtgagtaaac ... tgtaatgcagGATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
EST: gi|110722819|gb|EE099425.1|EE099425
EST:     TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCT                         GATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
genomic: TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCTgtgagtaaac ... tgtaatgcagGATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
EST: gi|110390441|gb|EC955350.1|EC955350
EST:     TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCT                         GATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
genomic: TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCTgtgagtaaac ... tgtaatgcagGATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
EST: gi|110720299|gb|EE096101.1|EE096101
EST:     TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCT                         GATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAANGCCAT
genomic: TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCTgtgagtaaac ... tgtaatgcagGATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
EST: gi|71871976|gb|DT021031.1|DT021031
EST:     TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCT                         GATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
genomic: TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCTgtgagtaaac ... tgtaatgcagGATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
EST: gi|110368629|gb|EC932617.1|EC932617
EST:     TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCT                         GATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
genomic: TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCTgtgagtaaac ... tgtaatgcagGATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
EST: gi|110398374|gb|EC964689.1|EC964689
EST:     TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCT                         GATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
genomic: TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCTgtgagtaaac ... tgtaatgcagGATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
EST: gi|30304354|gb|CB981148.1|CB981148
EST:     TTGCATTTGTTCTCTATGACAGCTTTAACAGAACTGCATTTCTAGCTGCT                         GATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
genomic: TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCTgtgagtaaac ... tgtaatgcagGATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
EST: gi|110693244|gb|EE069306.1|EE069306
EST:     TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCT                         GATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
genomic: TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCTgtgagtaaac ... tgtaatgcagGATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
EST: gi|110390708|gb|EC955632.1|EC955632
EST:     TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCT                         GATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
genomic: TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCTgtgagtaaac ... tgtaatgcagGATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
EST: gi|294965335|gb|GW837050.1|GW837050
EST:     TGCATTTGTTCTCTATGACAGCTCTAAACAGAACTGCATTTCTAGCTGCT                         GATGCTTGATGAGAGTGTTCCCTTCTTCTGG
genomic: -GCATTTGTTCTCTATGACAGCTCTAA-CAGAACTGCATTTCTAGCTGCTgtgagtaaac ... tgtaatgcagGATGCT-GATGAGAGTGTTCCCTTCTTCTGG
EST: gi|71866119|gb|DT015174.1|DT015174
EST:     TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCT                         GATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
genomic: TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCTgtgagtaaac ... tgtaatgcagGATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
EST: gi|110732240|gb|EE107353.1|EE107353
EST:     CAGCTCTAACAGAACTGCATTTCTAGCTGCT                         GATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
genomic: CAGCTCTAACAGAACTGCATTTCTAGCTGCTgtgagtaaac ... tgtaatgcagGATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
EST: gi|33404399|gb|CF210026.1|CF210026
EST:     TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCT                         GATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
genomic: TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCTgtgagtaaac ... tgtaatgcagGATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
EST: gi|22007717|gb|BQ792751.1|BQ792751
EST:     TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCT                         GATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
genomic: TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCTgtgagtaaac ... tgtaatgcagGATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
EST: gi|110719147|gb|EE096788.1|EE096788
EST:     TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCT                         GATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAAGCCAT
genomic: TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCTgtgagtaaac ... tgtaatgcagGATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
EST: gi|110719525|gb|EE094727.1|EE094727
EST:     TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCT                         GATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
genomic: TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCTgtgagtaaac ... tgtaatgcagGATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
EST: gi|110689126|gb|EE065077.1|EE065077
EST:     TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCT                         GATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
genomic: TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCTgtgagtaaac ... tgtaatgcagGATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
EST: gi|26263940|gb|CA815003.1|CA815003
EST:     TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCT                         GATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
genomic: TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCTgtgagtaaac ... tgtaatgcagGATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
EST: gi|294966029|gb|GW837396.1|GW837396
EST:     TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCT                         GATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
genomic: TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCTgtgagtaaac ... tgtaatgcagGATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
EST: gi|351027154|gb|FQ440016.1|FQ440016
EST:     TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCT                         GGTGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
genomic: TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCTgtgagtaaac ... tgtaatgcagGATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
EST: gi|110730595|gb|EE107855.1|EE107855
EST:     TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCT                         GATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
genomic: TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCTgtgagtaaac ... tgtaatgcagGATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
EST: gi|110684920|gb|EE062747.1|EE062747
EST:     TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCT                         GATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
genomic: TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCTgtgagtaaac ... tgtaatgcagGATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
EST: gi|110685279|gb|EE063522.1|EE063522
EST:     TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCT                         GATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
genomic: TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCTgtgagtaaac ... tgtaatgcagGATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
EST: gi|22011644|gb|BQ796678.1|BQ796678
EST:     TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCT                         GATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
genomic: TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCTgtgagtaaac ... tgtaatgcagGATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
EST: gi|87585474|gb|DY474177.1|DY474177
EST:     TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCT                         GATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
genomic: TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCTgtgagtaaac ... tgtaatgcagGATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
EST: gi|110372611|gb|EC936793.1|EC936793
EST:     TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCT                         GATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
genomic: TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCTgtgagtaaac ... tgtaatgcagGATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
EST: gi|34549368|gb|CF517600.1|CF517600
EST:     TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGTTGCT                         GATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
genomic: TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCTgtgagtaaac ... tgtaatgcagGATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
EST: gi|110688943|gb|EE068071.1|EE068071
EST:     TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCT                         GATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
genomic: TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCTgtgagtaaac ... tgtaatgcagGATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
EST: gi|110718953|gb|EE096378.1|EE096378
EST:     TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCT                         GATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAAGCCAT
genomic: TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCTgtgagtaaac ... tgtaatgcagGATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
EST: gi|110407788|gb|EC973403.1|EC973403
EST:     TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCT                         GATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
genomic: TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCTgtgagtaaac ... tgtaatgcagGATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
EST: gi|161711825|gb|FC058745.1|FC058745
EST:     TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCT                         GATGCTGATGAGAGTGTTCCCTTCTTCTGGGGA
genomic: TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCTgtgagtaaac ... tgtaatgcagGATGCTGATGAGAGTGTTCCCTTCTTCTGGGGA
EST: gi|33407951|gb|CF213578.1|CF213578
EST:     TTGCATTTGTTCTCTATGACAGCTCTAACATAACTGCATTTCTAGCTGCT                         GATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT
genomic: TTGCATTTGTTCTCTATGACAGCTCTAACAGAACTGCATTTCTAGCTGCTgtgagtaaac ... tgtaatgcagGATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caccttctttgaaggcagcttacatcaggtgtaactttacccacatgtaatgcagGATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCATCTTGTTCTTTCTGATGATGAAGAGACTGTGAAGAAGGGCTGTGGGATAT
                            gtgtaac  putative branch site (score: 3)
                               taacttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtaaaccttttggccagtaattttgctatccaatttcaagtatccctcttgttgctctcagattgttatgatcaccttctttgaaggcagcttacatcaggtgtaactttacccacatgtaatgcagGATGCTGATGAGAGTGTTCCCTTCTTCTGGGGAGTAGATTCTGAAGGCCATCTTGTTCTTTCTGATGATGAAGAGACTGTGAAGAAGGGCTGTGGGATAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG