1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...accaaaattttatattgaagtatgaatctgttgccgaatcatccatgggattgaatcatgttcttaagttgatgggtagtctttttccttatattttcagGCTCTGAAGGAGCTCCCTCGGGAAGAAATTCAATTAGCTACAAAATTTGGCCTTCAGGTGTTAGAGGTCGGTAAGGTTGTGATAAAGGGTACCCCTGAAT
species | Vitis vinifera |
transcript | Vv05s0020g04130.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CATCAGATATTTATGGAGCAAATCATGACAATGAGATCATGGTTGGAAAG GCTCTGAAGGAGCTCCCTCGGGAAGAAATTCAATTAGCTACAAAATTTGGCEST: gi|110712082|gb|EE089299.1|EE089299
genomic: CATCAGATATTTATGGAGCAAATCATGACAATGAGATCATGGTTGGAAAGgtactgtttt ... atattttcagGCTCTGAAGGAGCTCCCTCGGGAAGAAATTCAATTAGCTACAAAATTTGGC
EST: CATCAGATATTTATGGAGCAAATCATGACAATGAGATCATGGTTGGAAAG GCTCTGAAGGAGCTCCCTCGGGAAGAAATTCAATTAGCTACAAAATTTGGCEST: gi|33407206|gb|CF212833.1|CF212833
genomic: CATCAGATATTTATGGAGCAAATCATGACAATGAGATCATGGTTGGAAAGgtactgtttt ... atattttcagGCTCTGAAGGAGCTCCCTCGGGAAGAAATTCAATTAGCTACAAAATTTGGC
EST: CATCAGATATTTATGGAGCAAATCATGACAATGAGATCATGGTTGGAAAG GCTCTGAAGGAGCTCCCTCGGGAAGAAATTCAATTAGCTACAAAATTTGGCEST: gi|33406944|gb|CF212571.1|CF212571
genomic: CATCAGATATTTATGGAGCAAATCATGACAATGAGATCATGGTTGGAAAGgtactgtttt ... atattttcagGCTCTGAAGGAGCTCCCTCGGGAAGAAATTCAATTAGCTACAAAATTTGGC
EST: CATCAGATATTTATGGAGCAAATCATGACAATGAGATCATGGTTGGAAAG GCTCTGAAGGAGCTCCCTCGGGAAGAAATTCAATTAGCTACAAAATTTGGCEST: gi|30254500|gb|CB971245.1|CB971245
genomic: CATCAGATATTTATGGAGCAAATCATGACAATGAGATCATGGTTGGAAAGgtactgtttt ... atattttcagGCTCTGAAGGAGCTCCCTCGGGAAGAAATTCAATTAGCTACAAAATTTGGC
EST: CATCAGATATTTATGGAGCAAATCATGACAATGAGATCATGGTTGGAAAG GCTCTGAAGGAGCTCCCTCGGGAAGAAATTCAATTAGCTACAAAATTTGGC
genomic: CATCAGATATTTATGGAGCAAATCATGACAATGAGATCATGGTTGGAAAGgtactgtttt ... atattttcagGCTCTGAAGGAGCTCCCTCGGGAAGAAATTCAATTAGCTACAAAATTTGGC
tgggattgaatcatgttcttaagttgatgggtagtctttttccttatattttcagGCTCTGAAGGAGCTCCCTCGGGAAGAAATTCAATTAGCTACAAAATTTGGCCTTCAGGTGTTAGAGGTCGGTAAGGTTGTGATAAAGGGTACCCCTGAAT
agttgat putative branch site (score: 5)
tctttttccttatatt putative PPT
tttttccttatatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accaaaattttatattgaagtatgaatctgttgccgaatcatccatgggattgaatcatgttcttaagttgatgggtagtctttttccttatattttcagGCTCTGAAGGAGCTCCCTCGGGAAGAAATTCAATTAGCTACAAAATTTGGCCTTCAGGTGTTAGAGGTCGGTAAGGTTGTGATAAAGGGTACCCCTGAAT
-ccaaaat
- - - - - - - - - - - - - - tgttgcc
- - - - - - - - - - - - - - - - - - - tcatcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - catgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatggg