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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatctacacacttagaagattagccatggccagaggccatttcaggggctaataatcgtctattgtctggccttacctaagcatcatggcgattataatcactaaatcgctttgttttggtctctgtttttggacagCTTCTTCTGTGCCTGGATCAACATCACCAGCTCTAGCACCGGGATCTGACACAACTCCGTCTCTGACTCCAGACTCTCCTACTGTGGATTCCGATGCCCC

Basic information

species Vitis vinifera
transcript Vv05s0020g03750.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22015254|gb|BQ800288.1|BQ800288
EST:     AACACTCTCTCCTCAAGCCACTCCCTCTCCTACAGGACCTAGTCCTAAAG                         CTTCTTCTGTGCCTGGATCAACATCACCAGCTCTAGCACCGGGATCTGACA
genomic: AACACTCTCTCCTCAAGCCACTCCCTCTCCTACAGGACCTAGTCCTAAAGgtaatctaca ... ttttggacagCTTCTTCTGTGCCTGGATCAACATCACCAGCTCTAGCACCGGGATCTGACA
EST: gi|110386596|gb|EC951203.1|EC951203
EST:     AACACTCTCTCCTCAAGCCACTCCCTTTCCTACAGGACCTAGTCCTAAAG                         CTTTTTCTGTGCCTGGATCAACATCACCAGCTCTAGCCCCGGGATTTGACA
genomic: AACACTCTCTCCTCAAGCCACTCCCTCTCCTACAGGACCTAGTCCTAAAGgtaatctaca ... ttttggacagCTTCTTCTGTGCCTGGATCAACATCACCAGCTCTAGCACCGGGATCTGACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcatggcgattataatcactaaatcgctttgttttggtctctgtttttggacagCTTCTTCTGTGCCTGGATCAACATCACCAGCTCTAGCACCGGGATCTGACACAACTCCGTCTCTGACTCCAGACTCTCCTACTGTGGATTCCGATGCCCC
                 cactaaa  putative branch site (score: 2)
                                      tctctgttttt  putative PPT
         attataatcactaaat  TA-rich tract