Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggaattttcctcttttgttttgttttgtgtttttttcccccacttggtcattcattctcaacttgttaagatttcattttccttggcagATCTGCACAGTCTCCTTTGAGGCTTGTGAGTAGATTCCCTGATCATCCTGAAATTGGTACATTGCATGATAATTTTGT

Basic information

species Vitis vinifera
transcript Vv05s0020g03080.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g03080.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA20G28200.1 (Glycine max), 3'ss of exon 2
gtaggaattttcctcttttgttttgttttgtgtttttttcccccacttggtcattca--ttctcaacttgttaagatttc--attttccttggcagATCTGCACAGTCTCCTTTGAGGCTTGTGAGTAGATTCCCTGATCATCCTGAAATTGGTACATTGCATGATAATTTTGT
   | |    || ||   |||| |   |  || |||||| |  || |  |      |  |||| |   || ||   |||   ||| |   ||||||||||| ||  |||||| ||  ||| ||||  |  || ||| |||||||||||||||||||  ||||||||||||||||
---gtatacctcttccaatgttcttgatcttgattttttacatcattcaggggccaaatttctgagtatggtattgtttttaattctttctggcagATCTGTACGATCTCCTCTGCAGCTGGTGACCAAGTTTCCTAATCATCCTGAAATTGGTACCATGCATGATAATTTTGT

upper sequence: Vv05s0020g03080.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA10G39540.1 (Glycine max), 3'ss of exon 2
gtaggaattttcctcttttgttttgttttgtgtttttttcccccacttggtcattcattc-tcaacttgttaagatttc--attttccttggcagATCTGCACAGTCTCCTTTGAGGCTTGTGAGTAGATTCCCTGATCATCCTGAAATTGGTACATTGCATGATAATTTTGT
|||    | ||||  | ||  ||  | |||  |||| | |  |    |||   |  |||  | |   || ||  ||||   ||| |   ||||||||||| ||  |||||| ||  ||| ||||  |  || ||| |||||||||||||||||||  |||| |||||||||||
gtatacctcttccaatgtt-cttgatcttgatttttatacatcattctggggctaaatttatgagtatgatattatttttaattctttctggcagATCTGTACGATCTCCTCTGCAGCTGGTGACCAAGTTTCCTAATCATCCTGAAATTGGTACCCTGCACGATAATTTTGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcccccacttggtcattcattctcaacttgttaagatttcattttccttggcagATCTGCACAGTCTCCTTTGAGGCTTGTGAGTAGATTCCCTGATCATCCTGAAATTGGTACATTGCATGATAATTTTGT
                                     tttcattttcctt  CT-rich tract
                               ttaagatttcatttt  TA-rich tract