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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttctttatgatgcgtatgtttatttatgctgataactttctgattagattgtttgcataattactaaatggttctaaaaactattagttgaagttatttagtttagttattcatatattctaattttggaactacttatcaaaaaaaaaaaaattctaatttaactgtgttgtgtatctttcagGCCTCAAACTACTATTGGAACTGCCATGGTTTTATGCCACCGCTTTTTTGTTCGACGTTCGCATGCTTGCCATGATAGATTT

Basic information

species Vitis vinifera
transcript Vv05s0020g03060.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g03060.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA11G00680.1 (Glycine max), 3'ss of exon 2
gtaagttctttatgatgcgtatgtttatttatgctgataactttctgattagattgtttgcataattactaaatggttctaaaaactattagttgaagttatttagtttagttattcatatattctaattttggaactacttatcaaaaaaaaaaaaattctaatttaactgtgttgtgtatcttt-cagGCCTCAAACTACTATTGGAACTGCCATGGTTTTATGCCACCGCTTTTTTGTTCGACGTTCGCATGCTTGCCATGATAGATTT
                                     |||  |     |  |  || |  |||  ||  || |||  | | ||   ||||| |  ||  ||     | | | |||     |||  |  ||||  |    ||| |       |        ||   | || | || | |||  |||| ||||||||||||||| ||||| || ||||||||| | |||||||| |||||||||||||| || |||||||||||||| ||||||
------------------------------------gtaagatcacattgcgggtggtgacatt-ttgttatatgaatattaatgatattaatataa--taacatttctggctatgtgcttataattgttttatagtgccttctgccttgta-------cctg--taaagtttgatatgttcctttgcagGCCTCAAACTACCATTGGGACAGCCATGGTTCTGTGCCACCGGTTTTTTGTTCGACGATCACATGCTTGCCATGACAGATTT

upper sequence: Vv05s0020g03060.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA10G39550.2 (Glycine max), 3'ss of exon 2
gtaagttctttatgatgcgtatgtttatttatgctgataactttctgattagattgtttgcataattactaaatggttctaaaaactattagttgaagttatttagtttagttattcatatattctaattttggaactacttatcaaaaaaaaaaaaattctaatttaactgtgttgtgtatctttcagGCCTCAAACTACTATTGGAACTGCCATGGTTTTATGCCACCGCTTTTTTGTTCGACGTTCGCATGCTTGCCATGATAGATTT
                                                                                      |  |  |   ||||| ||  | | | | |  | |||   | | | |||  ||  ||   |      |  | | |  |||    |  || |     | || |||||||||||  |  ||||| || || |||||| | |||||||| || ||||||||||| || |||||||||||||||||||||
--------------------------------------------------------------------------------------tgatgttcttagttacttgatcttggtttgtagataaaatcactatggttctcattgctatttggcactagaataaaatcatgccatgatcc---ttttgcagGCCTCAAAACATCATTGGGACAGCTATGGTTCTGTGCCACCGTTTCTTTGTTCGACGATCACATGCTTGCCATGATAGATTT

upper sequence: Vv05s0020g03060.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA20G28190.1 (Glycine max), 3'ss of exon 3
gtaagttctttatgatgcgtatgtttatttatgctgataactttctgattagattgtttgcataattactaaatggttctaaaaactattagttgaagttatttagtttagttattcatatattctaattttggaactacttatcaaaaaaaaaaaaattctaatttaactgtgttgtgtatctttcagGCCTCAAACTACTATTGGAACTGCCATGGTTTTATGCCACCGCTTTTTTGTTCGACGTTCGCATGCTTGCCATGATAGATTT
                                                                                    | |  |  |    |||| ||  | | | | |  | |||   |   | |||  ||  ||   |      |  | |     ||  |   ||  ||    | || |||||||||||  |  ||||| || || |||||| | |||||||| || ||||||||||  || |||||||||||||||||||||
------------------------------------------------------------------------------------agtgatgttcttggttacttgatcttggtttgtagataaaattgctatggttctcattgctatttggcactaga-----ataaagtcgtcatgatccttttgcagGCCTCAAAACATCATTGGGACAGCTATGGTTCTGTGCCACCGTTTCTTTGTTCGACAATCACATGCTTGCCATGATAGATTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactacttatcaaaaaaaaaaaaattctaatttaactgtgttgtgtatctttcagGCCTCAAACTACTATTGGAACTGCCATGGTTTTATGCCACCGCTTTTTTGTTCGACGTTCGCATGCTTGCCATGATAGATTT
                                             tatctttc  CT-rich tract
      ttatcaaaaaaaaaaa  TA-rich tract