Sequence
atgc intronic sequence ATGC exonic sequencegtagactcaattgccatagctttgagtttatgtttgatttatgagaattggcattatgaattttcacttcacccttacaatcatatactataaatctaatgtctggatggatgtccttaattgaggtgagcttgtttcttttcagGTCACAAAGAAGCAAAGAATGCCCAATTTGCTGGCAGTTTCTTGTCTTGCAAGACCCTACCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g02860.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA07G38800.1 (Glycine max), 3'ss of exon 2
gtagactcaattgccatagctttgagtttatgtttgatttatgagaattggcattatgaattttcacttcacccttacaatcatatactataaatctaatgtctggatggatgtccttaattgaggtgagcttgtttcttttcagGTCACAAAGAAGCAAAGAATGCCCAATTTGCTGGCAGTTTCTTGTCTTGCAAGACCCTACCAG
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gtaagcctaatc-cctcaataggtggttt--gtttgatcttttaactttagttttttgaagccttggaaagtgatgtgaattgtttgctttca-tctaa---------aaatttcttt--------------ttctccccttaagGTCGCAGAGAAGCAAAGAATGCCCAATATGTTGGCAGTTACTTATCTTGAAAGACCCTGCCAG
upper sequence: Vv05s0020g02860.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA17G01920.1 (Glycine max), 3'ss of exon 2
gtagactcaattgccatagctttgagtttatgtttgatttatgagaattggcattatgaattttcacttcacccttacaatcatatactataaatctaatgtctggatggat--gtccttaattgaggtgagcttgtttcttttcagGTCACAAAGAAGCAAAGAATGCCCAATTTGCTGGCAGTTTCTTGTCTTGCAAGACCCTACCAG
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gtaagccaaatcgctcaatggatga-tttatgtttgacctgttaacttctgtttttttga----------agccttggaaa---gtgatgtgaattgtttgctttcatctataaatcttttatt------------ctccccttaagGTTGCAGAGAAGCAAAGAATGCCCAATATGTTGGCAGTTACTTATCTTGAAAGACCCTGCCAG
upper sequence: Vv05s0020g02860.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA13G27690.1 (Glycine max), 3'ss of exon 2
gtagact---caattgccatagctttgagtttatgtttgattt---atgagaattggcattatgaattttcacttcacccttacaatcatatactataaatctaatgtctggatggatgtccttaattgaggtgagcttgtttcttttcagGTCACAAAGAAGCAAAGAATGCCCAATTTGCTGGCAGTTTCTTGTCTTGCAAGACCCTACCAG
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gtaagctgtctaattgct-tgatgaatagatcgtgtttggtcttatatgagaagcaattgtatcatatttttttttttttttttttgcaaatatggacaat--agtgtgagttatgatgcctgcttctcacacaactcttttattctttagGTCACAAAGAAGCAAAGAGTGCCCAATCTGTTGGCAATCACTTGCTTTGAAAGATCCTGCCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taaatctaatgtctggatggatgtccttaattgaggtgagcttgtttcttttcagGTCACAAAGAAGCAAAGAATGCCCAATTTGCTGGCAGTTTCTTGTCTTGCAAGACCCTACCAG
cttgtttcttttc CT-rich tract
ttaattga TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtagactcaattgccatagctttgagtttatgtttgatttatgagaattggcattatgaattttcacttcacccttacaatcatatactataaatctaatgtctggatggatgtccttaattgaggtgagcttgtttcttttcagGTCACAAAGAAGCAAAGAATGCCCAATTTGCTGGCAGTTTCTTGTCTTGCAAGACCCTACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA