1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...gttgcagtactccatatggactgcagaataatcagttgaaaactccctcaagaaattcaatttccatagccaaaatttgatatcctctgtgtctgtgcagTACTCAGTATTTGCTTCCGTATTGGCAATTGGGGCAATGATTGGGGGGCTTACAAGCGGGCATATCTCCGATCTCATTGGAAGGAAAGGG
species | Vitis vinifera |
transcript | Vv05s0020g02260.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
cctcaagaaattcaatttccatagccaaaatttgatatcctctgtgtctgtgcagTACTCAGTATTTGCTTCCGTATTGGCAATTGGGGCAATGATTGGGGGGCTTACAAGCGGGCATATCTCCGATCTCATTGGAAGGAAAGGG
atttgat putative branch site (score: 5)
aaaatttgatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgcagtactccatatggactgcagaataatcagttgaaaactccctcaagaaattcaatttccatagccaaaatttgatatcctctgtgtctgtgcagTACTCAGTATTTGCTTCCGTATTGGCAATTGGGGCAATGATTGGGGGGCTTACAAGCGGGCATATCTCCGATCTCATTGGAAGGAAAGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- tgcagta
- - - - - -ccatatg
- - - - - - - - - -actgcag
- - - - - - - - - - - - - - - - - -ttgaaaa
- - - - - - - - - - - - - - - - - - - - - - - - -aagaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctctgt