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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagttagaccttctttttgatctggggcttttttatttttctcatttatttgattcattatagcatgttgagaaatcctttaaatccttattgtatatgtgtagctcaaactgtaaacatatgaacccttttctgatatggatattcgttttaacttttttcctcttatttgattcattagAGCATGTTGAGAAACCCCTTTGATCGGCACGAACTAGTTCGGCATGATGTTAAACAA

Basic information

species Vitis vinifera
transcript Vv05s0020g01800.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161721536|gb|FC069746.1|FC069746
EST:     CCTGCTGCAACGAGATCTTTCCTTGCCGCCATTGTCACAACGAGGCCACG                         AGCATGTTGAGAAACCCCTTTGATCGGCACGAACTAGTTCGGCATGATGTT
genomic: CCTGCTGCAACGAGATCTTTCCTTGCCGCCATTGTCACAACGAGGCCACGgtagttagac ... gattcattagAGCATGTTGAGAAACCCCTTTGATCGGCACGAACTAGTTCGGCATGATGTT
EST: gi|161716059|gb|FC067162.1|FC067162
EST:     CCTGCTGCAACGAGATCTTTCCTTGCCGCCATTGTCACAACGAGGCCACG                         AGCATGTTGAGAAACCCCTTTGATCGGCACGAACTAGTTCGGCATGATGTT
genomic: CCTGCTGCAACGAGATCTTTCCTTGCCGCCATTGTCACAACGAGGCCACGgtagttagac ... gattcattagAGCATGTTGAGAAACCCCTTTGATCGGCACGAACTAGTTCGGCATGATGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttttctgatatggatattcgttttaacttttttcctcttatttgattcattagAGCATGTTGAGAAACCCCTTTGATCGGCACGAACTAGTTCGGCATGATGTTAAACAA
                            cttttttcctcttatt  CT-rich tract
                                       ttatttgattcatta  TA-rich tract