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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttattctctttttctcatgcatacagctctgaatgttgtctttgtcgcttgtttgctgaacttataaaactaacaatgacaccgttctatgtcttttgaacagCTGAAAATGACCCACATGATGGTAAGAGAAAATGTGAGGCACTATGGCCGATTTTCAAAATAGCACATCAGAAGAGCCGTTATATTTTTGATCTTTACCA

Basic information

species Vitis vinifera
transcript Vv05s0020g01520.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g01520.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os01g63890.1 (Oryza sativa), 3'ss of exon 2
gttattctctttttctcatgcatacagctctgaatgttgtctttgtcgcttgtttgctgaacttataaaactaacaatgacaccgttctatgtcttttgaacagCTGAAAATGACCCACATGATGGTAAGAGAAAATGTGAGGCACTATGGCCGATTTTCAAAATAGCACATCAGAAGAGCCGTTATATTTTTGATCTTTACCA
                      ||   |     ||| |  | || ||   |||||  |||   |      || | |  || ||   | |       |     ||||||||||||| |||||||||| |||||||| || || || || ||||| ||||||   ||  | ||||| |  || || || || | |||||||||  |
---------------------gtatgacat---atgctcccctt-tcagatgtttattgatacttctgctcttatatggatactaatatcatctactcatgtagCTGAAAATGACACACATGATGGGAAGAGAAAGTGCGAAGCCCTCTGGCCAATTTTCCGTATTTCCCATCAAAGAAGTCGCTACATATATGATCTTTATTA

upper sequence: Vv05s0020g01520.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G053801_T01 (Zea mays), 3'ss of exon 2
gttattctctttttctcatgcatacagctctgaatgttgtctttgtcgcttgtttgctgaacttataaaactaacaatgacaccgttctatgtcttttgaacagCTGAAAATGACCCACATGATGGTAAGAGAAAATGTGAGGCACTATGGCCGATTTTCAAAATAGCACATCAGAAGAGCCGTTATATTTTTGATCTTTACCA
  ||| | |      | ||   |   || || | |  ||    ||||  |||||| |||     | |  | |     |   | |||| |    |  |    ||||||||||||| ||||||||||| |||||||| ||||| || || ||||| ||||||   ||  | ||||| | |||||| || || | |||||||||| |
-gtatgcacaaacggttat---tgaggcactcactactga---tgtcagttgtttcctgg---cacaggattg----tactaacgttatg---ccctcatgcagCTGAAAATGATCCACATGATGGGAAGAGAAAGTGTGAAGCTCTCTGGCCTATTTTCCGTATTTCTCATCAAAGGAGCCGCTACATATATGATCTTTACTA

upper sequence: Vv05s0020g01520.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G070451_T01 (Zea mays), 3'ss of exon 1
gttattctctttttctcatgcatacagctctgaatgttgtctttgtcgcttgtttgctgaacttataaaactaacaatgacaccg-ttctatgtcttttgaacagCTGAAAATGACCCACATGATGGTAAGAGAAAATGTGAGGCACTATGGCCGATTTTCAAAATAGCACATCAGAAGAGCCGTTATATTTTTGATCTTTACCA
  ||  | |   |    || |||      |     | |     |||   |||||   | |     ||  ||  |  ||   ||   | ||||| | ||    ||||||||||||| ||||||||||| |||||||| ||||| || || ||||| ||||||   ||  | ||||| | |||||| || || | |||| ||||| |
-gtaggcacagatggctattcatttgaggc-actcgctactgatgttagttgtt-atttattccctagcac--aggatcgtactaatgctatgccctt-atgcagCTGAAAATGATCCACATGATGGGAAGAGAAAGTGTGAAGCTCTCTGGCCTATTTTCCGCATTTCTCATCAAAGGAGCCGCTACATATATGATGTTTACTA

upper sequence: Vv05s0020g01520.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G020728_T01 (Zea mays), 3'ss of exon 2
gttattctctttttctcatgcatacagctctgaatgttgtctttgtcgcttgtttgctgaacttataaaactaacaatgacaccg-ttctatgtcttttgaacagCTGAAAATGACCCACATGATGGTAAGAGAAAATGTGAGGCACTATGGCCGATTTTCAAAATAGCACATCAGAAGAGCCGTTATATTTTTGATCTTTACCA
  ||  | | |      || |||      |       |     ||||  |||||   | |  |  ||  ||  |  ||   ||     ||||| | |     ||||||||||||| ||||||||||| |||||||| ||||| || || ||||| ||||||   ||  | ||||| | |||||| || || |  ||||||||  |
-gtaggcacatacggctattcatttgaggc-attcactactgatgtcagttgttattttatttcctagcac--aggatcgtactaacgctatgccctc-atgcagCTGAAAATGATCCACATGATGGAAAGAGAAAGTGTGAAGCTCTCTGGCCTATTTTCCGCATTTCTCATCAAAGGAGCCGCTACATATACGATCTTTATTA

upper sequence: Vv05s0020g01520.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G129979_T01 (Zea mays), 3'ss of exon 2
gttattctctttttctcatgcatacagctctgaatgttgtctttgtcgcttgtttgctgaacttataaaactaacaatgacaccgttctatgtcttttgaacagCTGAAAATGACCCACATGATGGTAAGAGAAAATGTGAGGCACTATGGCCGATTTTCAAAATAGCACATCAGAAGAGCCGTTATATTTTTGATCTTTACCA
                                         |  |||| || ||| || | |  |  |   ||| || | ||   |   |||         ||||||||||||| ||||||||||| |||||||| ||||| || || ||||| ||||||   ||  | ||||| | |||||  |  || | || ||||||| |
----------------------------------------gtaagtcg-ttattt-cttagcacaggattgtaataacgtcatgctctcatg---------cagCTGAAAATGATCCACATGATGGGAAGAGAAAGTGTGAAGCTCTCTGGCCTATTTTCTGTATTTCTCATCAAAGGAGCCACTTCATATATGGTCTTTACTA

upper sequence: Vv05s0020g01520.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G174792_T01 (Zea mays), 3'ss of exon 8
gttattctctttttctcatgcatacagctctgaatgttgtctttgtcgcttgtttgctgaacttataaaactaacaatgacaccgttctatgtcttttgaacagCTGAAAATGACCCACATGATGGTAAGAGAAAATGTGAGGCACTATGGCCGATTTTCAAAATAGCACATCAGAAGAGCCGTTATATTTTTGATCTTTACCA
                                         |  |||| || ||| ||      | |  | |   ||| || || | ||       | |  ||||||||||||| ||||||||||| |||||||| ||||| || || ||||| ||||||   ||  | ||||| | |||||  |  || | |||||||||| |
----------------------------------------gtaagtcg-ttatttcctag---cacaggattg-taataacgccatgct------ctcgtgcagCTGAAAATGATCCACATGATGGGAAGAGAAAGTGTGAAGCTCTCTGGCCTATTTTCCGTATTTCTCATCAAAGGAGCCACTTCATATATGATCTTTACTA

upper sequence: Vv05s0020g01520.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G095670_T02 (Zea mays), 3'ss of exon 2
-------gttattctctttttctcatgcatacagctctgaatgttgtctttgtcgcttgtttgctgaacttataaaactaacaatgacaccgttctatgtcttttgaacagCTGAAAATGACCCACATGATGGTAAGAGAAAATGTGAGGCACTATGGCCGATTTTCAAAATAGCACATCAGAAGAGCCGTTATATTTTTGATCTTTACCA
         ||  || ||  | | | |||  |  | |||| |||     ||||   || ||| || | |  |  |   ||  || |        ||||| | |     ||||||||||||| ||||||||||| |||||||| ||||| || || ||||| ||||||   ||  | ||||| | |||||| || || |  ||||||||| |
gtaggcacatacgctattaatttgaggcactcgccactga-tgtcag--ttgttatttatttcct-agcacaggatcgtactaacg--------ctatgccctc-atgcagCTGAAAATGATCCACATGATGGGAAGAGAAAGTGTGAAGCTCTCTGGCCTATTTTCCGCATTTCTCATCAAAGGAGCCGCTACATATACGATCTTTACTA

upper sequence: Vv05s0020g01520.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G099007_T01 (Zea mays), 3'ss of exon 1
gttattctctttttctcatgcatacagctctgaatgttgtctttgtcgcttgtttgctgaacttataaaactaacaatgacaccgttctatgtcttttgaacagCTGAAAATGACCCACATGATGGTAAGAGAAAATGTGAGGCACTATGGCCGATTTTCAAAATAGCACATCAGAAGAGCCGTTATATTTTTGATCTTTACCA
  ||| | |   |  | ||  | |||   || | |  ||    ||||  |||||| |||     | |  | |     |   | |||| |    |  |    ||||||||||||| ||||||||||| |||||||| ||||| || || ||||| ||||||   ||  | ||||| | |||||| || || | |||||||||| |
-gtatgcacagatggttattgagaca---ctcactactga---tgtcagttgtttcctgg---cacaggattg----tactaacgttatg---ccctcatgcagCTGAAAATGATCCACATGATGGAAAGAGAAAGTGTGAAGCGCTCTGGCCTATTTTCCGTATTTCTCATCAAAGGAGCCGCTACATATATGATCTTTACTA

upper sequence: Vv05s0020g01520.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G018464_T01 (Zea mays), 3'ss of exon 6
gttattctctttttctcatgcatacagctctgaatgttgtctttgtcgcttgtttgctgaacttataaaactaacaatgacaccgttctatgtcttttgaacagCTGAAAATGACCCACATGATGGTAAGAGAAAATGTGAGGCACTATGGCCGATTTTCAAAATAGCACATCAGAAGAGCCGTTATATTTTTGATCTTTACCA
                                         |  |||  || ||| ||      | || | |   ||| || || | ||       |    ||||||||||||| ||||||||||| |||||||| ||||| || || ||||| ||| ||   ||  | ||||| | |||||  |  || | || ||||||| |
----------------------------------------gtaagtc-tttatttcctag---cacaagattg-taataacgccatgct------ctcatgcagCTGAAAATGATCCACATGATGGGAAGAGAAAGTGTGAAGCTCTCTGGCCTATTATCTGTATTTCTCATCAAAGGAGCCACTTCATATATGGTCTTTACTA

upper sequence: Vv05s0020g01520.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA05G28440.2 (Glycine max), 3'ss of exon 3
gttattctctttttctcatgcatacagctctgaatgttgtctttgtcgcttgtttgctgaactta-taaaactaacaatgacaccgttctatgtcttttgaacagCTGAAAATGACCCACATGATGGTAAGAGAAAATGTGAGGCACTATGGCCGATTTTCAAAATAGCACATCAGAAGAGCCGTTATATTTTTGATCTTTACCA
         ||    |  | |||   |  || | |   |  ||| |    |  || ||||| | | | ||| ||| | |   |   | || | | |      ||||||| ||||| ||||||||||| || |||||||||||| || ||||||| || || || || ||||| ||||||||||| || || ||||| || |||||
--------gttggaattttacatcatgtgcttagta--gattttattatgttctttctgaaatcaatgaaattaatagttttat-atcctttatgt----ggcagCTGAGAATGATCCACATGATGGCAAAAGAAAATGTGAGACATTATGGCCAATATTTAAGATTGCACACCAGAAGAGCCGCTACATATTTGACCTCTACCA

upper sequence: Vv05s0020g01520.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G11450.1 (Glycine max), 3'ss of exon 3
gttattctctttttctcatgcatacagctctgaatgttgtctttgtcgcttgtttgctgaacttataaaactaacaatgacaccgttctatgtcttttg---aacagCTGAAAATGACCCACATGATGGTAAGAGAAAATGTGAGGCACTATGGCCGATTTTCAAAATAGCACATCAGAAGAGCCGTTATATTTTTGATCTTTACCA
         ||       | |||   | ||| | |   |  ||| |    |  || ||||| | |   || | |       |  ||| ||| || |||      ||||||| ||||| || |||||||| || |||||||||||| |  ||||||| || || || || ||||| ||||||||||| || || |||||||| |||||
--------gttggaaatttacatcatgttcttagta--ggttttattatgttctttctgaaatcaatgaaatga-------atagttttatatcctttatgtggcagCTGAGAATGATCCGCATGATGGCAAAAGAAAATGTGAGACCTTATGGCCTATATTTAAGATTGCACACCAGAAGAGCCGCTACATATTTGATCTATACCA

upper sequence: Vv05s0020g01520.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA07G15700.1 (Glycine max), 3'ss of exon 2
gttattctctt-tttctcatgcatacagctctgaatgttgtctttgtcgcttgtttgctgaacttataaaactaacaatgacaccgttctatgtcttttg-aacagCTGAAAATGACCCACATGATGGTAAGAGAAAATGTGAGGCACTATGGCCGATTTTCAAAATAGCACATCAGAAGAGCCGTTATATTTTTGATCTTTACCA
|||    | || | | | || | | |   |||  ||      ||| | |  |  || |||||    |  ||||     | |     ||  ||  ||| ||   ||||||| || || ||||||||||| |||||||| |||||| || ||||||| || || || || ||||| ||||||||||| || || ||||| || || ||
gttggaattttatatgtgatacttgcctttctagat------tttattgtgttctttctgaaacccttgaact-----taattgttttgcattccttatgtggcagCTGAGAACGATCCACATGATGGCAAGAGAAACTGTGAGACATTATGGCCTATATTTAAGATTGCACACCAGAAGAGCCGCTACATATTTGACCTCTATCA

upper sequence: Vv05s0020g01520.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: PP1S139_95V6.1 (Physcomitrella patens), 3'ss of exon 1
gttattctctttttctcatgc-atacagctctgaatgttgtctttgtcgcttgtttgctgaacttataaaactaacaatgacaccgttctatgtcttttgaacagCTGAAAATGACCCACATGATGGTAAGAGAAAATGTGAGGCACTATGGCCGATTTTCAAAATAGCACATCAGAAGAGCCGTTATATTTTTGATCTTTACCA
    || |   || |  ||   |  ||| |  | |  |     | ||  | | ||           |  || | ||    | |   || | | | |      ||||||| |||||  | ||||| ||||||||||||||||||||| | ||||| || ||||||||  ||||||| ||||| ||||||||||  ||||| |   |
----ttttacgttccaaattttacgcagtttagtaactcaagatggtgacatattaatatggagccttgaattgaccgaaatataattttgt-tgtgggatgcagCTGAGAATGAAACCCATGAGGGTAAGAGAAAATGTGAGGCATTGTGGCCCATATTCAAAATTTCACATCAAAAGAGTCGTTATATTTACGATCTCTTTTA

upper sequence: Vv05s0020g01520.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: PP1S22_313V6.2 (Physcomitrella patens), 3'ss of exon 1
gttattctctttttctcatgcatacagctctgaatgttgtctttgtcgcttgtttgctgaacttataaaactaacaa-tgacaccgttctatgtcttttgaacagCTGAAAATGACCCACATGATGGTAAGAGAAAATGTGAGGCACTATGGCCGATTTTCAAAATAGCACATCAGAAGAGCCGTTATATTTTTGATCTTTACCA
   || ||  | |  | |   |  ||| |  |  |       |||  | ||  |  |     | | |   |||     |||||    | | | | |      |||||||||||||  | ||||| || ||||| |||||||||||  | ||||| || ||||| ||  |||| |||||||||||||| |||| |||||| |   |
---atgcttctatcgtaacttaagcaggttggttttcacaggttgatgttttatcac--ggttgagatttctagtgtctgacatgaatttttttatgggatgcagCTGAAAATGAGACTCATGAGGGCAAGAGGAAATGTGAGGCTTTGTGGCCAATATTCAAGATCTCACACCAGAAGAGCCGTTACATTTATGATCTATTTTA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110388722|gb|EC953500.1|EC953500
EST:     GGAATTGATAGAGCCCACTCTTCGTGAACTACAAGGAAAGATGAGAGAAG                         CTGAAAATGACCCACATGATGGTAAGAGAAAATGTGAGGCACTATGGCCGA
genomic: GGAATTGATAGAGCCCACTCTTCGTGAACTACAAGGAAAGATGAGAGAAGgttattctct ... ttttgaacagCTGAAAATGACCCACATGATGGTAAGAGAAAATGTGAGGCACTATGGCCGA
EST: gi|110408210|gb|EC973836.1|EC973836
EST:     AAGATGAGAGAAG                         CTGAAAATGACCCACATGATGGTAAGAGAAAATGTGAGGCACTATGGCCGA
genomic: AAGATGAGAGAAGgttattctct ... ttttgaacagCTGAAAATGACCCACATGATGGTAAGAGAAAATGTGAGGCACTATGGCCGA
EST: gi|77588197|gb|DV223308.1|DV223308
EST:     GGAATTGATAGAGCCCACTCTTCGTGAACTACAAGGAAAGATGAGAGAAG                         CTGAAAATGACCCACATGATGGTAAGAGAAAATGTGAGGCACTATGGCCGA
genomic: GGAATTGATAGAGCCCACTCTTCGTGAACTACAAGGAAAGATGAGAGAAGgttattctct ... ttttgaacagCTGAAAATGACCCACATGATGGTAAGAGAAAATGTGAGGCACTATGGCCGA
EST: gi|110390257|gb|EC955158.1|EC955158
EST:     GGAATTGATAGAGCCCACTCTTCGTGAACTACAAGGAAAGATGAGAGAAG                         CTGAAAATGACCCACATGATGGTAAGAGAAAATGTGAGGCACTATGGCCGA
genomic: GGAATTGATAGAGCCCACTCTTCGTGAACTACAAGGAAAGATGAGAGAAGgttattctct ... ttttgaacagCTGAAAATGACCCACATGATGGTAAGAGAAAATGTGAGGCACTATGGCCGA
EST: gi|71873094|gb|DT022149.1|DT022149
EST:     GGAATTGATAGAGCCCACTCTTCGTGAACTACAAGGAAAGATGAGAGAAG                         CTGAAAATGACCCACATGATGGTAAGAGAAAATGTGAGGCACTATGGCCGA
genomic: GGAATTGATAGAGCCCACTCTTCGTGAACTACAAGGAAAGATGAGAGAAGgttattctct ... ttttgaacagCTGAAAATGACCCACATGATGGTAAGAGAAAATGTGAGGCACTATGGCCGA
EST: gi|110703965|gb|EE081360.1|EE081360
EST:     GGAATTGATAGAGCCCACTCTTCGTGAACTACAAGGAAAGATGAGAGAAG                         CTGAAAATGACCCACATGATGGTAAGAGAAAATGTGAGGCACTATGGCCGA
genomic: GGAATTGATAGAGCCCACTCTTCGTGAACTACAAGGAAAGATGAGAGAAGgttattctct ... ttttgaacagCTGAAAATGACCCACATGATGGTAAGAGAAAATGTGAGGCACTATGGCCGA
EST: gi|161712823|gb|FC062346.1|FC062346
EST:     GGAATTGATAGAGCCCACTCTTCGTGAACTACAAGGAAAGATGAGAGAAG                         CTGAAAATGACCCACATGATGGTAAGAGAAAATGTGAGGCACTATGGCCGA
genomic: GGAATTGATAGAGCCCACTCTTCGTGAACTACAAGGAAAGATGAGAGAAGgttattctct ... ttttgaacagCTGAAAATGACCCACATGATGGTAAGAGAAAATGTGAGGCACTATGGCCGA
EST: gi|110411061|gb|EC976761.1|EC976761
EST:     GGAATTGATAGAGCCCACTCTTCGTGAACTACAAGGAAAGATGAGAGAAG                         CTGAAAATGACCCACATGATGGTAAGAGAAAATGTGAGGCACTATGGCCGA
genomic: GGAATTGATAGAGCCCACTCTTCGTGAACTACAAGGAAAGATGAGAGAAGgttattctct ... ttttgaacagCTGAAAATGACCCACATGATGGTAAGAGAAAATGTGAGGCACTATGGCCGA
EST: gi|110384284|gb|EC948712.1|EC948712
EST:     GGAATTGATAGAGCCCACTCTTCGTGAACTACAAGGAAAGATGAGAGAAG                         CTGAAAATGACCCACATGATGGTAAGAGAAAATGTGAGGCACTATGGCCGA
genomic: GGAATTGATAGAGCCCACTCTTCGTGAACTACAAGGAAAGATGAGAGAAGgttattctct ... ttttgaacagCTGAAAATGACCCACATGATGGTAAGAGAAAATGTGAGGCACTATGGCCGA
EST: gi|71868362|gb|DT017417.1|DT017417
EST:     GGAATTGATAGAGCCCACTCTTCGTGAACTACAAGGAAAGATGAGAGAAG                         CTGAAAATGACCCACATGATGGTAAGAGAAAATGTGAGGCACTATGGCCGA
genomic: GGAATTGATAGAGCCCACTCTTCGTGAACTACAAGGAAAGATGAGAGAAGgttattctct ... ttttgaacagCTGAAAATGACCCACATGATGGTAAGAGAAAATGTGAGGCACTATGGCCGA
EST: gi|110694079|gb|EE070869.1|EE070869
EST:     GGAATTGATAGAGCCCACTCTTCGTGAACTACAAGGAAAGATGAGAGAAG                         CTGAAAATGACCCACATGATGGTAAGAGAAAATGTGAGGCACTATGGCCGA
genomic: GGAATTGATAGAGCCCACTCTTCGTGAACTACAAGGAAAGATGAGAGAAGgttattctct ... ttttgaacagCTGAAAATGACCCACATGATGGTAAGAGAAAATGTGAGGCACTATGGCCGA
EST: gi|110390488|gb|EC955400.1|EC955400
EST:     GGAATTGATAGAGCCCACTCTTCGTGAACTACAAGGAAAGATGAGAGAAG                         CTGAAAATGACCCACATGATGGTAAGAGAAAATGTGAGGCACTATGGCCGA
genomic: GGAATTGATAGAGCCCACTCTTCGTGAACTACAAGGAAAGATGAGAGAAGgttattctct ... ttttgaacagCTGAAAATGACCCACATGATGGTAAGAGAAAATGTGAGGCACTATGGCCGA
EST: gi|110684956|gb|EE062823.1|EE062823
EST:     GGAATTGATAGAGCCCACTCTTCGTGAACTACAAGGAAAGATGAGAGAAG                         CTGAAAATGACCCACATGATGGTAAGAGAAAATGTGAGGCACTATGGCCGA
genomic: GGAATTGATAGAGCCCACTCTTCGTGAACTACAAGGAAAGATGAGAGAAGgttattctct ... ttttgaacagCTGAAAATGACCCACATGATGGTAAGAGAAAATGTGAGGCACTATGGCCGA
EST: gi|34319429|gb|CF372183.1|CF372183
EST:     GGAATTGATAGAGCCCACTCTTCGTGAACTACAAGGAAAGATGAGAGAAG                         CTGAAAATGACCCACATGATGGTAAGAGAAAATGTGAGGCACTATGGCCGA
genomic: GGAATTGATAGAGCCCACTCTTCGTGAACTACAAGGAAAGATGAGAGAAGgttattctct ... ttttgaacagCTGAAAATGACCCACATGATGGTAAGAGAAAATGTGAGGCACTATGGCCGA
EST: gi|71873619|gb|DT022674.1|DT022674
EST:     GGAATTGATAGAGCCCACTCTTCGTGAACTACAAGGAAAGATGAGAGAAG                         CTGAAAATGACCCACATGATGGTAAGAGAAAATGTGAGGCACTATGGCCGA
genomic: GGAATTGATAGAGCCCACTCTTCGTGAACTACAAGGAAAGATGAGAGAAGgttattctct ... ttttgaacagCTGAAAATGACCCACATGATGGTAAGAGAAAATGTGAGGCACTATGGCCGA
EST: gi|77577432|gb|DV217443.1|DV217443
EST:     GGAATTGATAGAGCCCACTCTTCGTGAACTACAAGGAAAGATGAGAGAAG                         CTGAAAATGACCCACATGATGGTAAGAGAAAATGTGAGGCACTATGGCCGA
genomic: GGAATTGATAGAGCCCACTCTTCGTGAACTACAAGGAAAGATGAGAGAAGgttattctct ... ttttgaacagCTGAAAATGACCCACATGATGGTAAGAGAAAATGTGAGGCACTATGGCCGA
EST: gi|30297281|gb|CB974075.1|CB974075
EST:     GGAATTGATAGAGCCCACTCTTCGTGAACTACAAGGAAAGATGAGAGAAG                         CTGAAAATGACCCACATGATGGTAAGAGAAAATGTGAGGCACTATGGCCGA
genomic: GGAATTGATAGAGCCCACTCTTCGTGAACTACAAGGAAAGATGAGAGAAGgttattctct ... ttttgaacagCTGAAAATGACCCACATGATGGTAAGAGAAAATGTGAGGCACTATGGCCGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtttgctgaacttataaaactaacaatgacaccgttctatgtcttttgaacagCTGAAAATGACCCACATGATGGTAAGAGAAAATGTGAGGCACTATGGCCGATTTTCAAAATAGCACATCAGAAGAGCCGTTATATTTTTGATCTTTACCA
                   aactaac  putative branch site (score: 1)
                                         tgtctttt  putative PPT
             ttataaaactaacaat  TA-rich tract