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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttgaacataattttgatttttctgcaaggttttcgggttggttgatttttctaaatcatgatatgtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGATAAACATAGGGCATGTGGACGAGGACGGAGTGTTCACTGGTCAATTCTCC

Basic information

species Vitis vinifera
transcript Vv05s0020g01480.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g01480.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA15G15800.1 (Glycine max), 3'ss of exon 2
---------------------------------------------------gtatttgaacataattttgatttttctgcaaggttttcgggttggttgatttt----tctaaatcatgatatgtaattg---cagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGATAAACATAGGGCATGTGGACGAGGACGGAGTGTTCACTGGTCAATTCTCC
                                                    | |||    || ||  |  ||| | |    | | || | |||  || |||||    | | |||     | || | |||   ||| || |||||||| ||  | |||||  | ||||||||||| || |||||||| ||||| ||||||||||| ||| | || || | || ||| || ||||||
gtatgcgctttaatcctgcaatcactgttcgttaatttttaatttgtggggattttttttaatgatggttgtttatttatttgttctttgagtt--tttattttggaatttgaatggatttgtgaatttggtgcagCTCCGCCACAAACAGATTGATTACCGCTAAGGACCATGCTTCGGTTCAGATCAACATTGGGCATGTGGATGAGAATGGCGTCTACAATGGCCATTTCTCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71858718|gb|DT007773.1|DT007773
EST:     ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
EST: gi|30126267|gb|CB911606.1|CB911606
EST:     ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
EST: gi|110372840|gb|EC937034.1|EC937034
EST:     ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
EST: gi|30130090|gb|CB915429.1|CB915429
EST:     ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
EST: gi|30298272|gb|CB975066.1|CB975066
EST:     ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
EST: gi|110722148|gb|EE098126.1|EE098126
EST:     ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGTTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
EST: gi|32245894|gb|CD711713.1|CD711713
EST:     ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
EST: gi|110369147|gb|EC933294.1|EC933294
EST:     ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGTTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
EST: gi|110412369|gb|EC978117.1|EC978117
EST:     ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
EST: gi|110697003|gb|EE073611.1|EE073611
EST:     ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
EST: gi|87586305|gb|DY474625.1|DY474625
EST:     ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
EST: gi|110419134|gb|EC985336.1|EC985336
EST:     ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
EST: gi|110428108|gb|EC994569.1|EC994569
EST:     ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
EST: gi|110696043|gb|EE074748.1|EE074748
EST:     ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGTTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
EST: gi|110696798|gb|EE073240.1|EE073240
EST:     ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
EST: gi|110408368|gb|EC974003.1|EC974003
EST:     ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
EST: gi|34415890|gb|CF414644.1|CF414644
EST:     ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
EST: gi|71872553|gb|DT021608.1|DT021608
EST:     ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGTTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
EST: gi|110365138|gb|EC928915.1|EC928915
EST:     ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGTTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
EST: gi|110377318|gb|EC942384.1|EC942384
EST:     ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
EST: gi|110695069|gb|EE072662.1|EE072662
EST:     ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
EST: gi|27582593|gb|CB005288.1|CB005288
EST:     ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
EST: gi|110381610|gb|EC934920.1|EC934920
EST:     ATGCACAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
EST: gi|110389889|gb|EC954762.1|EC954762
EST:     ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
EST: gi|27584673|gb|CB007368.1|CB007368
EST:     ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
EST: gi|110688561|gb|EE067257.1|EE067257
EST:     ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
EST: gi|110694167|gb|EE071034.1|EE071034
EST:     ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
EST: gi|71882407|gb|DT031462.1|DT031462
EST:     ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctgcaaggttttcgggttggttgatttttctaaatcatgatatgtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGATAAACATAGGGCATGTGGACGAGGACGGAGTGTTCACTGGTCAATTCTCC
                             ttctaaa  putative branch site (score: 2)
                      ttgatttttctaaat  TA-rich tract