Sequence
atgc intronic sequence ATGC exonic sequence...atgacaaaaaattggcattgaaagacggtctgcaacatatttatcattgtgtccattaattaggttcttcagttattaaactttcaggattttgttgcagGCATTGGTGGGGGGAAGATATAATAGGCCCATGCCTAAGCTGCGAAATACAAAACCAGAGTCTGGAAGGTATGAAGAAAAACCAGCTCCGTCAGGAACCC
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110417823|gb|EC983910.1|EC983910EST: TGGTGGGTAGAATCAGATCTAAGTCTGGAGGGAGACTTGAGATGGGTGAG GCATTGGTGGGGGGAAGATATAATAGGCCCATGCCTAAGCTGCGAAATACA
genomic: TGGTGGGTAGAATCAGATCTAAGTCTGGAGGGAGACTTGAGATGGGTGAGgtgagctagt ... tttgttgcagGCATTGGTGGGGGGAAGATATAATAGGCCCATGCCTAAGCTGCGAAATACA
EST:
gi|34542289|gb|CF510521.1|CF510521EST: TGGTGGGTAGAATCAGATCTAAGTCTGGAGGGAGACTTGAGATGGGTGAG GCATTGGTGGGGGGAAGATATAATAGGCCCATGCCTAAGCTGCGAAATACA
genomic: TGGTGGGTAGAATCAGATCTAAGTCTGGAGGGAGACTTGAGATGGGTGAGgtgagctagt ... tttgttgcagGCATTGGTGGGGGGAAGATATAATAGGCCCATGCCTAAGCTGCGAAATACA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attgtgtccattaattaggttcttcagttattaaactttcaggattttgttgcagGCATTGGTGGGGGGAAGATATAATAGGCCCATGCCTAAGCTGCGAAATACAAAACCAGAGTCTGGAAGGTATGAAGAAAAACCAGCTCCGTCAGGAACCC
cattaat putative branch site (score: 3)
ttttgtt putative PPT
agttattaaacttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atgacaaaaaattggcattgaaagacggtctgcaacatatttatcattgtgtccattaattaggttcttcagttattaaactttcaggattttgttgcagGCATTGGTGGGGGGAAGATATAATAGGCCCATGCCTAAGCTGCGAAATACAAAACCAGAGTCTGGAAGGTATGAAGAAAAACCAGCTCCGTCAGGAACCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - -aaaaaat
- - - - - - - - - -gaaagac
- - - - - - - - - - - - - - -ctgcaac
- - - - - - - - - - - - - - - - - - - - - - - - - - ccattaa