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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagatctctcaacgccttgtcaaatgctcatttaatccattagtgattgattgattgatttttttcctttttccttttttttttcctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATAAAGGAGAATCAAGAGAAGATCAAGCTCAACAAGCAGCTACCCTACCTTG

Basic information

species Vitis vinifera
transcript Vv05s0020g01180.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g01180.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os06g07630.1 (Oryza sativa), 3'ss of exon 1
------------------------------------------------------gttagatctct--caac-gccttgtcaaatgctcatttaatcc-attagtgatt---gattgattgatttttttcc--tttttccttttttttttcctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATAAAGGAGAATCAAGAGAAGATCAAGCTCAACAAGCAGCTACCCTACCTTG
                                                         || | | |  ||   ||||  ||   ||    |||  |   ||||| | ||   | | |  ||||   |||    |||||  |  | |  ||       | |||| ||| ||||| | || ||  ||||| ||||||||||||| || || || |||||||| || |||||||| ||||||||||||||||| |||||||| |
gcaagcccgcctccgctctctctctctctcccctaaccctagatccccctccctccgaggtttttgccagttgcctcctccggtgaatctttgcttggattagggtttccgggtcgtctgatcggtttggggttttttttggtgtgattttggtgcgcagGATGAGCTGCAGCGGACCAACTTGGAGCTGGAATCGTTCAAGGAGAAGATTAAGGAGAACCAGGAGAAGATTAAGCTCAACAAGCAGCTTCCCTACCTCG

upper sequence: Vv05s0020g01180.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os02g56000.1 (Oryza sativa), 3'ss of exon 1
--------gttagatctctcaacgccttgtca--aatgctcatttaatccattagtgat-tgattgattgatttttttcctttttccttttttttttcctacttga------agGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATAAAGGAGAATCAAGAGAAGATCAAGCTCAACAAGCAGCTACCCTACCTTG
          |   ||||||  |||||   |   ||  |  |  |  | |   || ||| |  |  || |  |||  ||   |||       ||| ||  |   |       |||| ||| ||||| | ||||| || ||| ||||||| | ||| || || || |||||||| || ||||||||||| |||||||||||||| || |||||||
gtttgctctctctctctctctccgcctccgcgggaaaccctagcttttgccccagcgatctcctccatgggatttggtctgatttgtgggggtttgtctcatcgggtgcctcagGATGAGCTGCAGCGGACGAACCTTGAGGTGGAATCCTACAAGGAGAAGATCAAGGAGAACCAGGAGAAGATCAAACTCAACAAGCAGCTGCCTTACCTTG

upper sequence: Vv05s0020g01180.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G032505_T01 (Zea mays), 3'ss of exon 1
gttagatctctcaacgccttgtcaaatgctca----tttaatccattagtgattga--ttgatt--gattttttt--cctttttccttttttttttcctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATAAAGGAGAATCAAGAGAAGATCAAGCTCAACAAGCAGCTACCCTACCTTG
|| ||    | ||   |    ||  || |       ||     | |  | | | |   ||| ||  ||| | |      | |||  ||||| | || |  |    |||| ||||||||| | ||||| ||||||||||| |||||||| || || || ||||| || |||||||| || ||||||||||||||||| |||||||| |
gtgagcgagcccagtcctagatccgatccctgcgggttcggaacttcggcgttagggtttgcttctgatctgtggggtttgtttggtttttctcttgccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATTAAGGAAAACCAAGAGAAAATTAAGCTCAACAAGCAGCTGCCCTACCTCG

upper sequence: Vv05s0020g01180.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G032505_T02 (Zea mays), 3'ss of exon 1
gttagatctctcaacgccttgtcaaat----gctcatttaatccattagtgattga--ttgat--tgattttttt--cctttttccttttttttttcctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATAAAGGAGAATCAAGAGAAGATCAAGCTCAACAAGCAGCTACCCTACCTTG------------
|| ||    | ||   |    ||  ||    ||   ||     | |  | | | |   ||| |  |||| | |      | |||  ||||| | || |  |    |||| ||||||||| | ||||| ||||||||||| |||||||| || || || ||||| || |||||||| || ||||||||||||||||| |||||||| |            
gtgagcgagcccagtcctagatccgatccctgcgggttcggaacttcggcgttagggtttgcttctgatctgtggggtttgtttggtttttctcttgccgcacccaggacgagttgcagCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATTAAGGAAAACCAAGAGAAAATTAAGCTCAACAAGCAGCTGCCCTACCTCGTTGGCAACATCG

upper sequence: Vv05s0020g01180.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G027282_T01 (Zea mays), 3'ss of exon 1
gt-tagatctctcaacgccttgtcaaatgctcatttaatccattagtgattgattgattgatttttttcctttttccttttttt--tttcctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATAAAGGAGAATCAAGAGAAGATCAAGCTCAACAAGCAGCTACCCTACCTTG
||   ||   |  | | |     |   ||| | |     |||  ||||   |   || || | |  ||  |||    | ||||    |   |  |   |||| ||| ||||| |  |||| |||||| |||| ||  |||| || || |  |||||||| || |||||||| ||||||||||||||||| || ||||| |
gtgcggaaaccctagccctagccccgctgcgcgtc--gcccag-agtgtcgg---gactgttctgattgatttgggatgttttgggctgggtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACCAAGGAGAACCAGGAGAAGATTAAGCTCAACAAGCAGCTGCCGTACCTCG

upper sequence: Vv05s0020g01180.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: PP1S218_133V6.1 (Physcomitrella patens), 3'ss of exon 1
------------------------------------------------gttagatctctcaacgccttgtcaaatgctcatt-taatccattagtgattgattgattgatttttttcctttttccttttttttttcctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATAAAGGAGAATCAAGAGAAGATCAAGCTCAACAAGCAGCTACCCTACCTTG
                                                ||  | |      | | ||||      |    |  ||         ||  |    |  ||| || |      |    |   |    |   | || | ||| ||   ||| |||      |||||    ||  |    ||||||||||| |||||||||||||||||||||||||| || |||||||| || |||||||
gttttttctgcgccttgagtatggcgcgcctggttcatggttggatatgtatgttagtctgaggtcttgctgggggggtgtagtagcatggggttgtgtcgaggtgtgaattatcaatgatcggatgggtgggattggatttca-gGACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATCAAGGAGAATCAAGAGAAGATCAAGCTGAATAAGCAGCTGCCTTACCTTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26259299|gb|CA810362.1|CA810362
EST:     ACATTGCTAGAGCTTCCTGTCTCCTTGATAATGAGATTTGAATCTTCAAG                         GAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
genomic: ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAGgttagatctc ... ctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
EST: gi|349808820|gb|FQ406670.1|FQ406670
EST:     ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAG                         GAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
genomic: ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAGgttagatctc ... ctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
EST: gi|349812353|gb|FQ406374.1|FQ406374
EST:     ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAG                         GAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
genomic: ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAGgttagatctc ... ctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
EST: gi|349808282|gb|FQ403469.1|FQ403469
EST:     ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAG                         GAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
genomic: ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAGgttagatctc ... ctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
EST: gi|349833057|gb|FQ416435.1|FQ416435
EST:     ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAG                         GAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
genomic: ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAGgttagatctc ... ctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
EST: gi|351026753|gb|FQ436406.1|FQ436406
EST:     ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAG                         GAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
genomic: ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAGgttagatctc ... ctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
EST: gi|349812105|gb|FQ410902.1|FQ410902
EST:     ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAG                         GAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCGAAGAAAAAATA
genomic: ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAGgttagatctc ... ctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
EST: gi|351026800|gb|FQ436453.1|FQ436453
EST:     ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAG                         GAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
genomic: ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAGgttagatctc ... ctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
EST: gi|349816275|gb|FQ399385.1|FQ399385
EST:     ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAG                         GAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
genomic: ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAGgttagatctc ... ctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
EST: gi|349811569|gb|FQ409565.1|FQ409565
EST:     ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAG                         GAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
genomic: ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAGgttagatctc ... ctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
EST: gi|349818668|gb|FQ403502.1|FQ403502
EST:     ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAG                         GAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
genomic: ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAGgttagatctc ... ctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
EST: gi|349815538|gb|FQ400694.1|FQ400694
EST:     ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAG                         GAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
genomic: ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAGgttagatctc ... ctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
EST: gi|349818769|gb|FQ409303.1|FQ409303
EST:     ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAG                         GAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
genomic: ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAGgttagatctc ... ctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
EST: gi|349814178|gb|FQ414797.1|FQ414797
EST:     ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAG                         GAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
genomic: ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAGgttagatctc ... ctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
EST: gi|349809052|gb|FQ407501.1|FQ407501
EST:     ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAG                         GAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
genomic: ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAGgttagatctc ... ctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
EST: gi|349810100|gb|FQ401546.1|FQ401546
EST:     ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAG                         GAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
genomic: ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAGgttagatctc ... ctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
EST: gi|351037334|gb|FQ460533.1|FQ460533
EST:     ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAG                         GAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
genomic: ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAGgttagatctc ... ctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
EST: gi|349815049|gb|FQ410272.1|FQ410272
EST:     ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAG                         GAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
genomic: ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAGgttagatctc ... ctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
EST: gi|349814278|gb|FQ398704.1|FQ398704
EST:     ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAG                         GAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
genomic: ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAGgttagatctc ... ctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
EST: gi|351012252|gb|FQ426974.1|FQ426974
EST:     ACATTGCTAGAGCTTCCCGTCTCCTTGATAACGAGATTCGAATCCTCAAG                         GAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
genomic: ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAGgttagatctc ... ctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
EST: gi|349807880|gb|FQ402271.1|FQ402271
EST:     ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAG                         GAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
genomic: ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAGgttagatctc ... ctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
EST: gi|351033839|gb|FQ447877.1|FQ447877
EST:     ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAG                         GAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
genomic: ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAGgttagatctc ... ctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
EST: gi|349809200|gb|FQ398973.1|FQ398973
EST:     ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAG                         GAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
genomic: ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAGgttagatctc ... ctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
EST: gi|349822022|gb|FQ408351.1|FQ408351
EST:     ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAG                         GAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
genomic: ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAGgttagatctc ... ctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
EST: gi|349811159|gb|FQ406103.1|FQ406103
EST:     ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAG                         GAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
genomic: ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAGgttagatctc ... ctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
EST: gi|349822547|gb|FQ412822.1|FQ412822
EST:     ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAG                         GAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
genomic: ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAGgttagatctc ... ctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
EST: gi|351043388|gb|FQ451440.1|FQ451440
EST:     ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAG                         GAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
genomic: ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAGgttagatctc ... ctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
EST: gi|351024771|gb|FQ430596.1|FQ430596
EST:     ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAG                         GAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
genomic: ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAGgttagatctc ... ctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
EST: gi|349819018|gb|FQ411713.1|FQ411713
EST:     ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAG                         GAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
genomic: ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAGgttagatctc ... ctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
EST: gi|351023074|gb|FQ430949.1|FQ430949
EST:     ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAG                         GAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
genomic: ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAGgttagatctc ... ctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
EST: gi|349818376|gb|FQ409151.1|FQ409151
EST:     ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAG                         GAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
genomic: ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAGgttagatctc ... ctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
EST: gi|351047310|gb|FQ451822.1|FQ451822
EST:     ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAG                         GAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
genomic: ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAGgttagatctc ... ctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
EST: gi|349820629|gb|FQ408458.1|FQ408458
EST:     ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAG                         GAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
genomic: ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAGgttagatctc ... ctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
EST: gi|351023695|gb|FQ448246.1|FQ448246
EST:     ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAG                         GAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
genomic: ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAGgttagatctc ... ctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
EST: gi|349818006|gb|FQ407995.1|FQ407995
EST:     ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAG                         GAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
genomic: ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAGgttagatctc ... ctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
EST: gi|351012427|gb|FQ427028.1|FQ427028
EST:     ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAG                         GAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
genomic: ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAGgttagatctc ... ctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
EST: gi|349814949|gb|FQ410172.1|FQ410172
EST:     ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAG                         GAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
genomic: ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAGgttagatctc ... ctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
EST: gi|349809023|gb|FQ407472.1|FQ407472
EST:     ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAG                         GAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
genomic: ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAGgttagatctc ... ctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
EST: gi|349817520|gb|FQ407310.1|FQ407310
EST:     ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAG                         GAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
genomic: ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAGgttagatctc ... ctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
EST: gi|351037562|gb|FQ462545.1|FQ462545
EST:     ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAG                         GAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
genomic: ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAGgttagatctc ... ctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
EST: gi|351041131|gb|FQ444108.1|FQ444108
EST:     ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAG                         GAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
genomic: ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAGgttagatctc ... ctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
EST: gi|349816463|gb|FQ403838.1|FQ403838
EST:     ACATTGCTAGAGCTCCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAG                         GAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
genomic: ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAGgttagatctc ... ctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
EST: gi|349817057|gb|FQ399804.1|FQ399804
EST:     ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAG                         GAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
genomic: ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAGgttagatctc ... ctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
EST: gi|351040135|gb|FQ425221.1|FQ425221
EST:     ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAG                         GAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
genomic: ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAGgttagatctc ... ctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
EST: gi|349814705|gb|FQ409928.1|FQ409928
EST:     ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAG                         GAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
genomic: ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAGgttagatctc ... ctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
EST: gi|349815856|gb|FQ401012.1|FQ401012
EST:     ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAG                         GAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
genomic: ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAGgttagatctc ... ctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
EST: gi|351054548|gb|FQ452024.1|FQ452024
EST:     ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAG                         GAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
genomic: ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAGgttagatctc ... ctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
EST: gi|349816484|gb|FQ403859.1|FQ403859
EST:     ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAG                         GAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
genomic: ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAGgttagatctc ... ctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
EST: gi|352798843|gb|FQ478478.1|FQ478478
EST:     ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAG                         GAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
genomic: ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAGgttagatctc ... ctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
EST: gi|349822553|gb|FQ412828.1|FQ412828
EST:     ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAG                         GAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
genomic: ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAGgttagatctc ... ctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
EST: gi|349833224|gb|FQ416602.1|FQ416602
EST:     ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAG                         GAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA
genomic: ACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAGgttagatctc ... ctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagtgattgattgattgatttttttcctttttccttttttttttcctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATAAAGGAGAATCAAGAGAAGATCAAGCTCAACAAGCAGCTACCCTACCTTG
            gattgat  putative branch site (score: 4)
              ttgatttttttccttt  CT-rich tract
                 atttttttcctttttc  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttagatctctcaacgccttgtcaaatgctcatttaatccattagtgattgattgattgatttttttcctttttccttttttttttcctacttgaagGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATAAAGGAGAATCAAGAGAAGATCAAGCTCAACAAGCAGCTACCCTACCTTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT