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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacataagctcactcattctggtacatagttgatgatttttggtctgggtaggtggctgaccatcttgcttccttgtttgattatatatatagGTGCTGAATGATCAGACTTTTGCTATCTTAGTTCTTATGGCGTTGTTCACCACCTTCATCACCACCCCAATTGTGACCGCCTTGTATAAGCCAGCCAGGA

Basic information

species Vitis vinifera
transcript Vv05s0020g01150.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g01150.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA13G17670.1 (Glycine max), 3'ss of exon 2
-----------------------------------gtacataagctc------actcattctggtacatagttgatgatttttggtctgggtaggtggctgaccatc--ttgct-tccttgttt---gattatat--------atatagGTGCTGAATGATCAGACTTTTGCTATCTTAGTTCTTATGGCGTTGTTCACCACCTTCATCACCACCCCAATTGTGACCGCCTTGTATAAGCCAGCCAGGA
                                     |||  || |        ||||  |    | ||   |  | ||| ||| | |   ||   | ||   | |   ||| | |  ||||||    ||  |          ||| ||||| ||||||| ||  | ||||| || |  ||||| ||||| ||||| ||||||||||||||||||||||| ||||  ||  | ||||| |||||  | |
gtattatataatatatcctatccactcatagtaacaaacactagttttctttggctcacacacacatatgtcttttaattgttgttataattaaaagacttttccttcattgttatatttgtttatgaatcgttcttcttgcaatacagGTGTTGAATGACCAAGCATTTGCCATTTGTGTTCTCATGGCATTGTTTACCACCTTCATCACCACCCCAATAGTGATGGCTGTATATAAACCAGCTCGCA

upper sequence: Vv05s0020g01150.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA17G04820.1 (Glycine max), 3'ss of exon 2
---------------------------------------gtacataagctcactcattctggtac----atagttgatgatttttggtctgggtaggtggctgaccatcttgcttccttgt-----ttgattatata-tatagGTGCTGAATGATCAGACTTTTGCTATCTTAGTTCTTATGGCGTTGTTCACCACCTTCATCACCACCCCAATTGTGACCGCCTTGTATAAGCCAGCCAGGA
                                        | | |  |||||| ||  |  ||      || |||||     |||      |    ||   | |   |  |  ||  ||||     ||  |  |  | |  ||||| ||||||| ||  | ||||| || |  ||||| ||||| ||||| ||||||||||||||||||||||| || |  ||  | ||||| |||||  | |
gtatatataatatatccattcatcataacaaacactgattttccttggctcacacacacatgtcttttaattgttgacataatttataaaagacttgtacttcattgttatatttgattgtgaatcttcttcttgcaatgcagGTGTTGAATGACCAAGCATTTGCCATTTGTGTTCTCATGGCATTGTTTACCACCTTCATCACCACCCCAATAGTAATGGCTGTTTATAAACCAGCTCGCA

upper sequence: Vv05s0020g01150.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT3G17630.1 (Arabidopsis thaliana), 3'ss of exon 2
gtacataagctcactcattctggtacatagttgatgatttttggtctgggtaggtggctgaccatcttgcttccttgtttgattatatatatagGTGCTGAATGATCAGACTTTTGCTATCTTAGTTCTTATGGCGTTGTTCACCACCTTCATCACCACCCCAATTGTGACCGCCTTGTATAAGCCAGCCAGGA
    |||   ||     ||      |||| |  | || || |        ||   | |     ||||   |  |   |||     | |    ||||||||||||||||  | ||||| |||||||| || ||||| |||||||| ||||||||||| || ||||||||||      | || ||||| || || |
--gtatagattc-----ttgaaagccataat--aagacttataaaacatttaaaagccgagttatctaaataacgatttt-----tgtgagcagGTGCTGAATGATCAAGCATTTGCGATCTTAGTCCTAATGGCATTGTTCACAACCTTCATCACAACTCCAATTGTGATGCTTATTTACAAGCCTGCAAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttggtctgggtaggtggctgaccatcttgcttccttgtttgattatatatatagGTGCTGAATGATCAGACTTTTGCTATCTTAGTTCTTATGGCGTTGTTCACCACCTTCATCACCACCCCAATTGTGACCGCCTTGTATAAGCCAGCCAGGA
                                   ttgtttgattatatat  TA-rich tract