1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aaagaccttgtatctgtttctactggaagagaaattcctaatgtcttgactcttagtaccatagttggaccttgattttttattcttatgttgaatgaagGAGGAGTCGGTTACAGAGTACCAGAGCCCTAAATTTAAAGACATTCAAAAACTCATTGCCAACAAGTTGGAACACCCAAAAATTAAGCAGGAGGCAAGCA
species | Vitis vinifera |
transcript | Vv05s0020g00920.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACCTTGCTGCTGCTCTAGCAAAGATAACTGCCCTTACTAGTCGTCAACAG GAGGAGTCGGTTACAGAGTACCAGAGCCCTAAATTTAAAGACATTCAAAAAEST: gi|351018677|gb|FQ424784.1|FQ424784
genomic: ACCTTGCTGCTGCTCTAGCAAAGATAACTGCCCTTACTAGTCGTCAACAGgtaacaaatt ... ttgaatgaagGAGGAGTCGGTTACAGAGTACCAGAGCCCTAAATTTAAAGACATTCAAAAA
EST: ACCTTGCTGCTGCTCTAGCAAAGATAACTGCCCTTACTAGTCGTCAACAG GAGGAGTCGGTTACAGAGTACCAGAGCCCTAAATTTAAAGACATTCAAAAAEST: gi|351025939|gb|FQ427951.1|FQ427951
genomic: ACCTTGCTGCTGCTCTAGCAAAGATAACTGCCCTTACTAGTCGTCAACAGgtaacaaatt ... ttgaatgaagGAGGAGTCGGTTACAGAGTACCAGAGCCCTAAATTTAAAGACATTCAAAAA
EST: ACCTTGCTGCTGCTCTAGCAAAGATAACTGCCCTTACTAGTCGTCAACAG GAGGAGTCGGTTACAGAGTACCAGAGCCCTAAATTTAAAGACATTCAAAAAEST: gi|349830154|gb|FQ420414.1|FQ420414
genomic: ACCTTGCTGCTGCTCTAGCAAAGATAACTGCCCTTACTAGTCGTCAACAGgtaacaaatt ... ttgaatgaagGAGGAGTCGGTTACAGAGTACCAGAGCCCTAAATTTAAAGACATTCAAAAA
EST: ACCTTGCTGCTGCTCTAGCAAAGATAACTGCCCTTACTAGTCGTCAACAG GAGGAGTCGGTTACAGAGTACCAGAGCCCTAAATTTAAAGACATTCAAAAAEST: gi|351017822|gb|FQ436175.1|FQ436175
genomic: ACCTTGCTGCTGCTCTAGCAAAGATAACTGCCCTTACTAGTCGTCAACAGgtaacaaatt ... ttgaatgaagGAGGAGTCGGTTACAGAGTACCAGAGCCCTAAATTTAAAGACATTCAAAAA
EST: ACCTTGCTGCTGCTCTAGCAAAGATAACTGCCCTTACTAGTCGTCAACAG GAGGAGTCGGTTACAGAGTACCAGAGCCCTAAATTTAAAGACATTCAAAAAEST: gi|349827883|gb|FQ422751.1|FQ422751
genomic: ACCTTGCTGCTGCTCTAGCAAAGATAACTGCCCTTACTAGTCGTCAACAGgtaacaaatt ... ttgaatgaagGAGGAGTCGGTTACAGAGTACCAGAGCCCTAAATTTAAAGACATTCAAAAA
EST: ACCTTGCTGCTGCTCTAGCAAAGATAACTGCCCTTACTAGTCGTCAACAG GAGGAGTCGGTTACAGAGTACCAGAGCCCTAAATTTAAAGACATTCAAAAA
genomic: ACCTTGCTGCTGCTCTAGCAAAGATAACTGCCCTTACTAGTCGTCAACAGgtaacaaatt ... ttgaatgaagGAGGAGTCGGTTACAGAGTACCAGAGCCCTAAATTTAAAGACATTCAAAAA
ttgactcttagtaccatagttggaccttgattttttattcttatgttgaatgaagGAGGAGTCGGTTACAGAGTACCAGAGCCCTAAATTTAAAGACATTCAAAAACTCATTGCCAACAAGTTGGAACACCCAAAAATTAAGCAGGAGGCAAGCA
attttttattcttatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaagaccttgtatctgtttctactggaagagaaattcctaatgtcttgactcttagtaccatagttggaccttgattttttattcttatgttgaatgaagGAGGAGTCGGTTACAGAGTACCAGAGCCCTAAATTTAAAGACATTCAAAAACTCATTGCCAACAAGTTGGAACACCCAAAAATTAAGCAGGAGGCAAGCA
aaagacc
- -gaccttg
- - - - - - -ctgtttc
- - - - - - - - - - - - - aagagaa
- - - - - - - - - - - - - - - - - - - - -tgtcttg