1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aaaaaaaaaaaaaagggatgacagctgtgagatttatggttttagtgcattttgaggatccatgcactattaaagctcatgtgaaaatcatatgtttcagATTAATCAAGGAGTTTGATCGTGAAATGAAAGATGAGGAGCGTGGAAATCCTCCTGAGGTTAATAAGCAGCTCAATGATGAAAAACAATCTATG
species | Vitis vinifera |
transcript | Vv05s0020g00750.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAAAGTAAACAGCTGGAGGAACTTACAGGGAGAATGAGGGAGTGTAAAAG ATTAATCAAGGAGTTTGATCGTGAAATGAAAGATGAGGAGCGTGGAAATCCEST: gi|110701974|gb|EE080154.1|EE080154
genomic: CAAAGTAAACAGCTGGAGGAACTTACAGGGAGAATGAGGGAGTGTAAAAGgtgccataca ... tatgtttcagATTAATCAAGGAGTTTGATCGTGAAATGAAAGATGAGGAGCGTGGAAATCC
EST: CAAAGTAAACAGCTGGAGGAACTTACAGGGAGAATGAGGGAGTGTAAAAG ATTAATCAAGGAGTTTGATCGTGAAATGAAAGATGAGGAGCGTGGAAATCCEST: gi|110417235|gb|EC983274.1|EC983274
genomic: CAAAGTAAACAGCTGGAGGAACTTACAGGGAGAATGAGGGAGTGTAAAAGgtgccataca ... tatgtttcagATTAATCAAGGAGTTTGATCGTGAAATGAAAGATGAGGAGCGTGGAAATCC
EST: CAAAGTAAACAGCTGGAGGAACTTACAGGGAGAATGAGGGAGTGTAAAAG ATTAATCAAGGAGTTTGATCGTGAAATGAAAGATGAGGAGCGTGGAAATCCEST: gi|351044413|gb|FQ442944.1|FQ442944
genomic: CAAAGTAAACAGCTGGAGGAACTTACAGGGAGAATGAGGGAGTGTAAAAGgtgccataca ... tatgtttcagATTAATCAAGGAGTTTGATCGTGAAATGAAAGATGAGGAGCGTGGAAATCC
EST: CAAAGTAAACAGCTGGAGGAACTTACAGGGAGAATGAGGGAGTGTAAAAG ATTAATCAAGGAGTTTGATCGTGAAATGAAAGATGAGGAGCGTGGAAATCCEST: gi|351033770|gb|FQ447808.1|FQ447808
genomic: CAAAGTAAACAGCTGGAGGAACTTACAGGGAGAATGAGGGAGTGTAAAAGgtgccataca ... tatgtttcagATTAATCAAGGAGTTTGATCGTGAAATGAAAGATGAGGAGCGTGGAAATCC
EST: CAAAGTAAACAGCTGGAGGAACTTACAGGGAGAATGAGGGAGTGTAAAAG ATTAATCAAGGAGTTTGATCGTGAAATGAAAGATGAGGAGCGTGGAAATCC
genomic: CAAAGTAAACAGCTGGAGGAACTTACAGGGAGAATGAGGGAGTGTAAAAGgtgccataca ... tatgtttcagATTAATCAAGGAGTTTGATCGTGAAATGAAAGATGAGGAGCGTGGAAATCC
tgcattttgaggatccatgcactattaaagctcatgtgaaaatcatatgtttcagATTAATCAAGGAGTTTGATCGTGAAATGAAAGATGAGGAGCGTGGAAATCCTCCTGAGGTTAATAAGCAGCTCAATGATGAAAAACAATCTATG
aaaatcatatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaaaaaaaaaaaagggatgacagctgtgagatttatggttttagtgcattttgaggatccatgcactattaaagctcatgtgaaaatcatatgtttcagATTAATCAAGGAGTTTGATCGTGAAATGAAAGATGAGGAGCGTGGAAATCCTCCTGAGGTTAATAAGCAGCTCAATGATGAAAAACAATCTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
aaaaaaa
- - - - - - - - - - -cagctgt
- - - - - - - - - - - - - - - - - - - - - - gtgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaatc