Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaaaacgtttttcttttacgattttcgtttgtcttcttccttcttcgcttttatggcgatcgatgatggaacggtttgttgtctgtgtttgcagCCTGGGAGCAAGGTGACGTATCCGATCGCTGCGGATCCAAAGAGAGAGATCATCAAACAACTAAACATGGTGGATCCGGATGAAAAAGACTCCTCTGGAA

Basic information

species Vitis vinifera
transcript Vv05s0020g00600.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30137533|gb|CB922871.1|CB922871
EST:     ACGATGTGCAGTCCCACAAGGAGTGGATCAAGGACATTGAGGCCTACACT                         CCTGGGAGCAAGGTGACGTATCCGATCGCTGCGGATCCAAAGAGAGAGATC
genomic: ACGATGTGCAGTCCCACAAGGAGTGGATCAAGGACATTGAGGCCTACACTgtaagcaaaa ... gtgtttgcagCCTGGGAGCAAGGTGACGTATCCGATCGCTGCGGATCCAAAGAGAGAGATC
EST: gi|22008129|gb|BQ793163.1|BQ793163
EST:     ACGATGTGCAGTCCCACAAGGAGTGGATCAAGGACATTGAGGCCTACACT                         CCTGGGAGCAAGGTGACGTATCCGATCGCTGCGGATCCAAAGAGAGAGATC
genomic: ACGATGTGCAGTCCCACAAGGAGTGGATCAAGGACATTGAGGCCTACACTgtaagcaaaa ... gtgtttgcagCCTGGGAGCAAGGTGACGTATCCGATCGCTGCGGATCCAAAGAGAGAGATC
EST: gi|27586715|gb|CB009410.1|CB009410
EST:     ACGATGTGCAGTCCCACAAGGAGTGGATCAAGGACATTGAGGCCTACACT                         CCTGGGAGCAAGGTGACGTATCCGATCGCTGCGGATCCAAAGAGAGAGATC
genomic: ACGATGTGCAGTCCCACAAGGAGTGGATCAAGGACATTGAGGCCTACACTgtaagcaaaa ... gtgtttgcagCCTGGGAGCAAGGTGACGTATCCGATCGCTGCGGATCCAAAGAGAGAGATC
EST: gi|30133724|gb|CB919063.1|CB919063
EST:     ACGATGTGCAGTCCCACAAGGAGTGGATCAAGGACATTGAGGCCTACACT                         CCTGGGAGCAAGGTGACGTATCCGATCGCTGCGGATCCAAAGAGAGAGATC
genomic: ACGATGTGCAGTCCCACAAGGAGTGGATCAAGGACATTGAGGCCTACACTgtaagcaaaa ... gtgtttgcagCCTGGGAGCAAGGTGACGTATCCGATCGCTGCGGATCCAAAGAGAGAGATC
EST: gi|27582335|gb|CB005030.1|CB005030
EST:     ACGATGTGCAGTCCCACAAGGAGTGGATCAAGGACATTGAGGCCTACACT                         CCTGGGAGCAAGGTGACGTATCCGATCGCTGCGGATCCAAAGAGAGAGATC
genomic: ACGATGTGCAGTCCCACAAGGAGTGGATCAAGGACATTGAGGCCTACACTgtaagcaaaa ... gtgtttgcagCCTGGGAGCAAGGTGACGTATCCGATCGCTGCGGATCCAAAGAGAGAGATC
EST: gi|30126734|gb|CB912073.1|CB912073
EST:     ACGATGTGCAGTCCCACAAGGAGTGGATCAAGGACATTGAGGCCTACACT                         CCTGGGAGCAAGGTGACGTATCCGATCGCTGCGGATCCAAAGAGAGAGATC
genomic: ACGATGTGCAGTCCCACAAGGAGTGGATCAAGGACATTGAGGCCTACACTgtaagcaaaa ... gtgtttgcagCCTGGGAGCAAGGTGACGTATCCGATCGCTGCGGATCCAAAGAGAGAGATC
EST: gi|30134777|gb|CB920115.1|CB920115
EST:     ACGATGTGCAGTCCCACAAGGAGTGGATCAAGGACATTGAGGCCTACACT                         CCTGGGAGCAAGGTGACGTATCCGATCGCTGCGGATCCAAAGAGAGAGATC
genomic: ACGATGTGCAGTCCCACAAGGAGTGGATCAAGGACATTGAGGCCTACACTgtaagcaaaa ... gtgtttgcagCCTGGGAGCAAGGTGACGTATCCGATCGCTGCGGATCCAAAGAGAGAGATC
EST: gi|30133782|gb|CB919121.1|CB919121
EST:     ACGATGTGCAGTCCCACAAGGAGTGGATCAAGGACATTGAGGCCTACACT                         CCTGGGAGCAAGGTGACGTATCCGATCGCTGCGGATCCAAAGAGAGAGATC
genomic: ACGATGTGCAGTCCCACAAGGAGTGGATCAAGGACATTGAGGCCTACACTgtaagcaaaa ... gtgtttgcagCCTGGGAGCAAGGTGACGTATCCGATCGCTGCGGATCCAAAGAGAGAGATC
EST: gi|110365492|gb|EC928569.1|EC928569
EST:     ACGATGTGCAGTCCCACAAGGAGTGGATCAAGGACATTGAGGCCTACACT                         CCTGGGAGCAAGGTGACGTATCCGATCGCTGCGGATCCAAAGAGAGAGATC
genomic: ACGATGTGCAGTCCCACAAGGAGTGGATCAAGGACATTGAGGCCTACACTgtaagcaaaa ... gtgtttgcagCCTGGGAGCAAGGTGACGTATCCGATCGCTGCGGATCCAAAGAGAGAGATC
EST: gi|30134151|gb|CB919489.1|CB919489
EST:     ACGATGTGCAGTCCCACAAGGAGTGGATCAAGGACATTGAGGCCTACACT                         CCTGGGAGCAAGGTGACGTATCCGATCGCTGCGGATCCAAAGAGAGAGATC
genomic: ACGATGTGCAGTCCCACAAGGAGTGGATCAAGGACATTGAGGCCTACACTgtaagcaaaa ... gtgtttgcagCCTGGGAGCAAGGTGACGTATCCGATCGCTGCGGATCCAAAGAGAGAGATC
EST: gi|110397422|gb|EC963157.1|EC963157
EST:     ACGATGTGCAGTCCCACAAGGAGTGGATCAAGGACATTGAGGCCTACACT                         CCTGGGAGCAAGGTGACGTATCCGATCGCTGCGGATCCAAAGAGAGAGATC
genomic: ACGATGTGCAGTCCCACAAGGAGTGGATCAAGGACATTGAGGCCTACACTgtaagcaaaa ... gtgtttgcagCCTGGGAGCAAGGTGACGTATCCGATCGCTGCGGATCCAAAGAGAGAGATC
EST: gi|27583177|gb|CB005872.1|CB005872
EST:     ACGATGTGCAGTCCCACAAGGAGTGGATCAAGGACATTGAGGCCTACACT                         CCTGGGAGCAAGGTGACGTATCCGATCGCTGCGGATCCAAAGAGAGAGATC
genomic: ACGATGTGCAGTCCCACAAGGAGTGGATCAAGGACATTGAGGCCTACACTgtaagcaaaa ... gtgtttgcagCCTGGGAGCAAGGTGACGTATCCGATCGCTGCGGATCCAAAGAGAGAGATC
EST: gi|110401288|gb|EC967893.1|EC967893
EST:     ACGATGTGCAGTCCCACAAGGAGTGGATCAAGGACATTGAGGCCTACACT                         CCTGGGAGCAAGGTGACGTATCCGATCGCTGCGGATCCAAAGAGAGAGATC
genomic: ACGATGTGCAGTCCCACAAGGAGTGGATCAAGGACATTGAGGCCTACACTgtaagcaaaa ... gtgtttgcagCCTGGGAGCAAGGTGACGTATCCGATCGCTGCGGATCCAAAGAGAGAGATC
EST: gi|30136361|gb|CB921699.1|CB921699
EST:     ACGATGTGCAGTCCCACAAGGAGTGGATCAAGGACATTGAGGCCTACACT                         CCTGGGAGCAAGGTGACGTATCCGATCGCTGCGGATCCAAAGAGAGAGATC
genomic: ACGATGTGCAGTCCCACAAGGAGTGGATCAAGGACATTGAGGCCTACACTgtaagcaaaa ... gtgtttgcagCCTGGGAGCAAGGTGACGTATCCGATCGCTGCGGATCCAAAGAGAGAGATC
EST: gi|27586984|gb|CB009679.1|CB009679
EST:     ACGATGTGCAGTCCCACAAGGAGTGGATCAAGGACATTGAGGCCTACACT                         CCTGGGAGCAAGGTGACGTATCCGATCGCTGCGGATCCAAAGAGAGAGATC
genomic: ACGATGTGCAGTCCCACAAGGAGTGGATCAAGGACATTGAGGCCTACACTgtaagcaaaa ... gtgtttgcagCCTGGGAGCAAGGTGACGTATCCGATCGCTGCGGATCCAAAGAGAGAGATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttcttcgcttttatggcgatcgatgatggaacggtttgttgtctgtgtttgcagCCTGGGAGCAAGGTGACGTATCCGATCGCTGCGGATCCAAAGAGAGAGATCATCAAACAACTAAACATGGTGGATCCGGATGAAAAAGACTCCTCTGGAA
         ttttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagcaaaacgtttttcttttacgattttcgtttgtcttcttccttcttcgcttttatggcgatcgatgatggaacggtttgttgtctgtgtttgcagCCTGGGAGCAAGGTGACGTATCCGATCGCTGCGGATCCAAAGAGAGAGATCATCAAACAACTAAACATGGTGGATCCGGATGAAAAAGACTCCTCTGGAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC