Sequence
atgc intronic sequence ATGC exonic sequence...tttttaatcactgttaattctgcttttatatttttggctctgtagtgtttttggtttgttatgaattgattatgactaattttttaattaaattccatagGGTGAAAATGTGCCTCCACCTTTAATGACCTTTGAAGCAACTGGTTTCCCTCCAGAGATATTGAGAGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g00470.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os11g46240.1 (Oryza sativa), 3'ss of exon 2
tttttaatcactgttaattctgcttttatatttttggc-tctgtagtgtttttggtttgttatgaa--ttgattatgactaattttttaattaaattccatagGGTGAAAATGTGCCTCCACCTTTAATGACCTTTGAAGCAACTGGTTTCCCTCCAGAGATATTGAGAGAG
|| || | || || | | ||||| || |||| | ||||| ||| | | || | | | || | | |||| | ||||||| ||||||||||| || || ||||| || || || ||||| |||||||||||||| ||| ||||
--cttcattttt-ctagttgagttggtatatcaatgttatctgctttatttttcatttactgtaaaaccttttcacatgctatcctgtttctaaaattttcagGGTGAGAATGTGCCTCCTCCATTTATGACATTCGAGGCTACTGGATTCCCTCCAGAGATCTTGCAAGAG
upper sequence: Vv05s0020g00470.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA15G14470.1 (Glycine max), 3'ss of exon 2
-tttttaat-cactgttaattctgcttttatatttttggctctgtagtgtttttggtttgttatgaattgattatgactaattttttaattaaattccatagGGTGAAAATGTGCCTCCACCTTTAATGACCTTTGAAGCAACTGGTTTCCCTCCAGAGATATTGAGAGAG
|||||| | | ||| | | | | | |||||| | | || | || | | |||| || ||| | ||| ||| | | | | ||||||| || | || || ||||| ||||| ||||| || ||||| ||||||||||||||||||||||||
gtttttatttccttgtagagtgtccgactttattttaaatt-tatatttcttgtatatctttatattttctttac-atcaatatttatgtcttactggacagGGTGACAACATTCCACCTCCTTTCATGACATTTGATGCTACTGGGTTCCCTCCAGAGATATTGAGAGAG
upper sequence: Vv05s0020g00470.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA09G03560.1 (Glycine max), 3'ss of exon 4
-tttttaatcactgttaattctgcttttatatttttggctctgtagtgtttttggtttgttatgaattgattatgactaattttttaattaaattccatagGGTGAAAATGTGCCTCCACCTTTAATGACCTTTGAAGCAACTGGTTTCCCTCCAGAGATATTGAGAGAG
|||||| | | || || | |||| | | || | ||| | | |||| | || || | | ||| ||| | | | ||||||| || | || || ||||| ||||| ||||| || || || ||||||||||||||||||||||||
gtttttatttccctgtagaatgactgactttattttaaatttatattttttgtatatctttat-attttcttttcatcaatatttatgtcttgctggacagGGTGACAACATTCCACCTCCTTTCATGACATTTGACGCTACAGGGTTCCCTCCAGAGATATTGAGAGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtttttggtttgttatgaattgattatgactaattttttaattaaattccatagGGTGAAAATGTGCCTCCACCTTTAATGACCTTTGAAGCAACTGGTTTCCCTCCAGAGATATTGAGAGAG
tttgttatgaattgat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttttaatcactgttaattctgcttttatatttttggctctgtagtgtttttggtttgttatgaattgattatgactaattttttaattaaattccatagGGTGAAAATGTGCCTCCACCTTTAATGACCTTTGAAGCAACTGGTTTCCCTCCAGAGATATTGAGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - -ttctgct
- - - - - - - - - - - - - - - - - - -ctctgta
- - - - - - - - - - - - - - - - - - - - - - - - - -tggtttg